Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K11
(90 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-... 27 0.15
BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII, a... 30 1.5
AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen mid... 30 1.5
AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen lon... 30 1.5
AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen sho... 30 1.5
AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collag... 30 1.5
AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen pro... 30 1.5
AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen pro... 30 1.5
X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein. 28 1.6
X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein. 28 1.6
BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha... 28 1.6
BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha... 28 1.6
AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1... 28 1.6
X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein. 28 1.6
Z95116-3|CAI17988.1| 423|Homo sapiens protein ( Human DNA seque... 28 4.6
CR456407-1|CAG30293.1| 443|Homo sapiens bK984G1.1 protein. 28 4.6
BC046358-1|AAH46358.1| 443|Homo sapiens EMI domain containing 1... 28 4.6
AL831910-1|CAD38573.1| 226|Homo sapiens hypothetical protein pr... 28 4.6
AL031186-3|CAI18002.1| 423|Homo sapiens protein ( Human DNA seq... 28 4.6
AK130327-1|BAC85328.1| 131|Homo sapiens protein ( Homo sapiens ... 28 4.6
AJ416090-1|CAC94777.1| 441|Homo sapiens putative emu1 protein p... 28 4.6
Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV ... 27 8.1
X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 ... 27 8.1
D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen prot... 27 8.1
BC126349-1|AAI26350.1| 648|Homo sapiens C1orf127 protein protein. 27 8.1
AL358492-3|CAH72679.1| 656|Homo sapiens chromosome 1 open readi... 27 8.1
AL358492-2|CAO03597.1| 648|Homo sapiens chromosome 1 open readi... 27 8.1
AK094437-1|BAC04355.1| 656|Homo sapiens protein ( Homo sapiens ... 27 8.1
AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein. 27 8.1
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 25 9.4
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 25 9.4
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 25 9.4
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 25 9.4
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 25 9.6
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 25 9.8
>X60382-1|CAA42933.1| 680|Homo sapiens collagen subunit (alpha-1
(X)) 3 protein.
Length = 680
Score = 27.5 bits (58), Expect(2) = 0.15
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A N PPGPPG G
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRG 499
Score = 24.6 bits (51), Expect(2) = 0.15
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
>BC063833-1|AAH63833.1| 1336|Homo sapiens collagen, type XVIII,
alpha 1 protein.
Length = 1336
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 376 GPAGPALQTVPGPQGPPGPPGRDG 399
>AY484971-3|AAR83297.1| 1516|Homo sapiens type XVIII collagen middle
variant protein.
Length = 1516
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 556 GPAGPALQTVPGPQGPPGPPGRDG 579
>AY484971-2|AAR83296.1| 1751|Homo sapiens type XVIII collagen long
variant protein.
Length = 1751
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 791 GPAGPALQTVPGPQGPPGPPGRDG 814
>AY484971-1|AAR83298.1| 1336|Homo sapiens type XVIII collagen short
variant protein.
Length = 1336
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 376 GPAGPALQTVPGPQGPPGPPGRDG 399
>AL163302-2|CAB90482.1| 1519|Homo sapiens human type XVIII collagen
protein.
Length = 1519
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 556 GPAGPALQTVPGPQGPPGPPGRDG 579
>AF018082-1|AAC39659.1| 1336|Homo sapiens type XVIII collagen
protein.
Length = 1336
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 376 GPAGPALQTVPGPQGPPGPPGRDG 399
>AF018081-1|AAC39658.1| 1516|Homo sapiens type XVIII collagen
protein.
Length = 1516
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G AL + PPGPPG DG
Sbjct: 556 GPAGPALQTVPGPQGPPGPPGRDG 579
>X98568-1|CAA67178.1| 680|Homo sapiens type X collagen protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHS 501
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPG 496
>X72579-1|CAA51170.1| 680|Homo sapiens collagen X protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHS 501
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPG 496
>BC130623-1|AAI30624.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHS 501
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPG 496
>BC130621-1|AAI30622.1| 680|Homo sapiens collagen, type X, alpha
1(Schmid metaphyseal chondrodysplasia) protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHS 501
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPG 496
>AL121963-4|CAB87590.1| 680|Homo sapiens collagen type X alpha 1
protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 476 GPAGIATKGLNGPTGPPGPPGPRGHS 501
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 509 PPGPPGPPGQAVM 521
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 473 GPPGPAGIATKGLNGPTGPPGPPG 496
>X65120-1|CAA46236.1| 629|Homo sapiens alpha1(X)collagen protein.
Length = 629
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDGEA 8
GP G A N PPGPPG G +
Sbjct: 425 GPAGIATKGLNGPTGPPGPPGPRGHS 450
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 40 PPGPPGVDGEALV 2
PPGPPG G+A++
Sbjct: 458 PPGPPGPPGQAVM 470
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 85 GPGGCALWATNHRRHPPGPPGVDG 14
GP G A AT P GPPG G
Sbjct: 422 GPPGPAGIATKGLNGPTGPPGPPG 445
>Z95116-3|CAI17988.1| 423|Homo sapiens protein ( Human DNA sequence
from clone CTA-57G9 on chromosome 22q12.1. ).
Length = 423
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 212 GSPGRAGAVGTPGERGPPGPPGPPG 236
>CR456407-1|CAG30293.1| 443|Homo sapiens bK984G1.1 protein.
Length = 443
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 232 GSPGRAGAVGTPGERGPPGPPGPPG 256
>BC046358-1|AAH46358.1| 443|Homo sapiens EMI domain containing 1
protein.
Length = 443
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 232 GSPGRAGAVGTPGERGPPGPPGPPG 256
>AL831910-1|CAD38573.1| 226|Homo sapiens hypothetical protein
protein.
Length = 226
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 144 GSPGRAGAVGTPGERGPPGPPGPPG 168
>AL031186-3|CAI18002.1| 423|Homo sapiens protein ( Human DNA
sequence from clone CTA-984G1 on chromosome
22q12.1-12.2. ).
Length = 423
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 212 GSPGRAGAVGTPGERGPPGPPGPPG 236
>AK130327-1|BAC85328.1| 131|Homo sapiens protein ( Homo sapiens
cDNA FLJ26817 fis, clone PRS06446. ).
Length = 131
Score = 28.3 bits (60), Expect = 4.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 12 SPSTPGGPGGWRLW 53
+PS GGPGGW +W
Sbjct: 55 NPSILGGPGGWIIW 68
>AJ416090-1|CAC94777.1| 441|Homo sapiens putative emu1 protein
protein.
Length = 441
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG T R PPGPPG G
Sbjct: 230 GSPGRAGAVGTPGERGPPGPPGPPG 254
>Y17397-1|CAA76763.1| 1690|Homo sapiens collagen alpha 4 type IV
protein.
Length = 1690
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG C L PPGPPG G
Sbjct: 1289 GEPGDCGLPGPPGPPGPPGPPGYKG 1313
>X81053-1|CAA56943.1| 1690|Homo sapiens type IV collagen alpha 4 chain
protein.
Length = 1690
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG C L PPGPPG G
Sbjct: 1289 GEPGDCGLPGPPGPPGPPGPPGYKG 1313
>D17391-1|BAA04214.1| 472|Homo sapiens alpha 4(IV) collagen
protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG C L PPGPPG G
Sbjct: 71 GEPGDCGLPGPPGPPGPPGPPGYKG 95
>BC126349-1|AAI26350.1| 648|Homo sapiens C1orf127 protein protein.
Length = 648
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 18 STPGGPGGWRLWLVAHSAHPP 80
S PG P G W VAH++ PP
Sbjct: 561 SAPGWPVGQEEWGVAHTSSPP 581
>AL358492-3|CAH72679.1| 656|Homo sapiens chromosome 1 open reading
frame 127 protein.
Length = 656
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 18 STPGGPGGWRLWLVAHSAHPP 80
S PG P G W VAH++ PP
Sbjct: 569 SAPGWPVGQEEWGVAHTSSPP 589
>AL358492-2|CAO03597.1| 648|Homo sapiens chromosome 1 open reading
frame 127 protein.
Length = 648
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 18 STPGGPGGWRLWLVAHSAHPP 80
S PG P G W VAH++ PP
Sbjct: 561 SAPGWPVGQEEWGVAHTSSPP 581
>AK094437-1|BAC04355.1| 656|Homo sapiens protein ( Homo sapiens
cDNA FLJ37118 fis, clone BRACE2022328. ).
Length = 656
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 18 STPGGPGGWRLWLVAHSAHPP 80
S PG P G W VAH++ PP
Sbjct: 569 SAPGWPVGQEEWGVAHTSSPP 589
>AC079235-1|AAY14670.1| 1324|Homo sapiens unknown protein.
Length = 1324
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPGVDG 14
G PG C L PPGPPG G
Sbjct: 1289 GEPGDCGLPGPPGPPGPPGPPGYKG 1313
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 586 GPPGGVGFPGSRGDTGPPGPPG 607
Score = 20.6 bits (41), Expect(2) = 9.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 645 PGPPGAEG 652
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 586 GPPGGVGFPGSRGDTGPPGPPG 607
Score = 20.6 bits (41), Expect(2) = 9.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 645 PGPPGAEG 652
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 586 GPPGGVGFPGSRGDTGPPGPPG 607
Score = 20.6 bits (41), Expect(2) = 9.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 645 PGPPGAEG 652
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 25.0 bits (52), Expect(2) = 9.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 586 GPPGGVGFPGSRGDTGPPGPPG 607
Score = 20.6 bits (41), Expect(2) = 9.4
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 645 PGPPGAEG 652
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 25.0 bits (52), Expect(2) = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 541 GPPGGVGFPGSRGDTGPPGPPG 562
Score = 20.6 bits (41), Expect(2) = 9.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 600 PGPPGAEG 607
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 25.0 bits (52), Expect(2) = 9.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 88 GGPGGCALWATNHRRHPPGPPG 23
G PGG + PPGPPG
Sbjct: 586 GPPGGVGFPGSRGDTGPPGPPG 607
Score = 20.6 bits (41), Expect(2) = 9.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3
Query: 37 PGPPGVDG 14
PGPPG +G
Sbjct: 645 PGPPGAEG 652
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,178,254
Number of Sequences: 237096
Number of extensions: 385491
Number of successful extensions: 4297
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4223
length of database: 76,859,062
effective HSP length: 11
effective length of database: 74,251,006
effective search space used: 1336518108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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