Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K09
         (478 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   2.6  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   3.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   4.5  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.9  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   5.9  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.9  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.9  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 245 LTCLQFQESDLEEAIKKLSKHFQSEEESVVRVK 343
           LT L+FQ SDL  +I  LSK  +  E+   ++K
Sbjct: 575 LTDLEFQCSDLSSSIDILSKQDEEHEKEKRKLK 607


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 319 LRLEVLGQFFDCFFQIRLLKLKTS--QIFEVKIV 224
           LR +VL +FF CF+  R+   + S  Q+ E  +V
Sbjct: 690 LRTDVLPEFFHCFWSRRMASDRRSYKQVVETTVV 723


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 181 FVGLLEKCKSSDEALQFLLRIS 246
           +V LLEK +  DEAL+F   IS
Sbjct: 521 YVDLLEKLEKFDEALEFASAIS 542


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 266 ESDLEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPYANLNNLIDETI 418
           E+D   AI +     QS       + ILWL  ++ L  P  ++NN + + +
Sbjct: 264 ENDSSSAISEKLSFKQSLTVFKHPIAILWLLEEMALGVPLNSINNWLPQIV 314


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 263 QESDLEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPYANLNNLIDETIHL 424
           + +D ++A  KLS    S  E V   +     CD GL+   AN+NN + +   L
Sbjct: 307 RHTDNQKAFAKLS----SPAEYVSEFEKFSSVCDHGLDISNANINNTLTQQFAL 356


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +2

Query: 113 RKGHPRKNYI*LRNP**GALLLHSLAYWRNVNRVMKPYNFYFEYLTCLQFQESDLEEAIK 292
           ++G P K+Y  + N     ++L++L      +R +  +NF+ +    L F   D   AI 
Sbjct: 204 KRGTPIKSYPQINNTPINLMMLYALVMRAGGSRQVSAHNFWPKISASLGFPSPD---AIS 260

Query: 293 KLSKHFQS 316
            L +++ S
Sbjct: 261 LLIQYYNS 268


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 343 LNPHN*LLLRLEVLGQ 296
           LNPH  LLLR+E+ G+
Sbjct: 908 LNPHGELLLRIEMEGE 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,360
Number of Sequences: 5004
Number of extensions: 37174
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)