Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K09
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44...    30   1.1  
06_01_0848 - 6463100-6463293,6463983-6465144                           28   4.5  
05_03_0168 - 9116648-9117775,9118699-9118885,9119724-9119821,911...    28   4.5  
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742...    27   5.9  
07_03_1274 + 25377018-25377127,25377673-25377802,25377898-253780...    27   7.8  

>08_01_0064 +
           444888-444959,445073-445277,445736-445901,446029-446251,
           446982-447058,447370-447557,447845-447942,448202-448335,
           448421-448555,448832-448960,449263-449632,449897-450018,
           450155-450274,450396-450626,450706-450894,450978-451089,
           451193-451438
          Length = 938

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -1

Query: 109 NISQTQPVLFSLSAQPFRIF*SKNILVI 26
           NIS +QPV+ ++ + P++ + S N++V+
Sbjct: 440 NISSSQPVVLAMHSAPYKCYESSNLMVL 467


>06_01_0848 - 6463100-6463293,6463983-6465144
          Length = 451

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 239 EYLTCLQFQESDLEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPY 385
           E+   L + + DL  A++ +  H  + +E  +R  + +L  D+GLE PY
Sbjct: 255 EFFKKLGWSQDDLSLAVRSMP-HILAMKEERMRRGMKFLTEDVGLEIPY 302


>05_03_0168 -
           9116648-9117775,9118699-9118885,9119724-9119821,
           9119948-9120114,9122242-9122578
          Length = 638

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RKEHWLSLGNVFRKGHPRKNY 139
           RKEH L L N F+K HP  NY
Sbjct: 294 RKEHDLGLANYFKK-HPSLNY 313


>09_06_0352 + 22472369-22472731,22472829-22472941,22473420-22474226,
            22474314-22474620,22474862-22475027,22475491-22475534,
            22476019-22476161,22477900-22477937,22478032-22478129,
            22478130-22478220,22478514-22478693,22479311-22479495,
            22479583-22479678,22480151-22480297,22480763-22480864,
            22480932-22481564
          Length = 1170

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +1

Query: 193  LEKCKSSDEALQFLLRISDLSSVSR-----VGFGRSNQKTVQAL 309
            L++   S+  ++FL   SD  SV R      GFGR+N++TV  L
Sbjct: 876  LQQLSHSELMMRFLADGSDFESVERNTLAFKGFGRTNKETVAEL 919


>07_03_1274 +
           25377018-25377127,25377673-25377802,25377898-25378049,
           25378135-25378327,25378505-25378623,25378711-25378927,
           25379038-25379133,25379249-25379422,25379530-25379646,
           25379742-25379908,25379987-25380211,25380299-25380617,
           25380703-25380947,25381042-25381180,25381277-25381324
          Length = 816

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 275 LEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPYANLNNLIDETIHLL 427
           L+ A++K  KH           +    F ++GLE  + +    + ETIHLL
Sbjct: 209 LQGALRKAEKHLAGITADTPYSEFHHRFQELGLEKGWGDCAQRVRETIHLL 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,906,455
Number of Sequences: 37544
Number of extensions: 208766
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)