Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K09
         (478 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009995-1|AAH09995.1|  505|Homo sapiens INT4 protein protein.         40   0.006
BC030599-1|AAH30599.1|  782|Homo sapiens C3orf20 protein protein.      30   4.8  
BC098580-1|AAH98580.1|  653|Homo sapiens Rho GTPase activating p...    29   8.3  
AK091196-1|BAC03606.1|  748|Homo sapiens protein ( Homo sapiens ...    29   8.3  

>BC009995-1|AAH09995.1|  505|Homo sapiens INT4 protein protein.
          Length = 505

 Score = 39.5 bits (88), Expect = 0.006
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = +2

Query: 263 QESDLEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPYANLNN--LIDETIHLLKSE 436
           +   +E  ++ L +H+  E +  VR+KI  L   +GL    A  +   ++D+ I++L++E
Sbjct: 65  EAESVEGVVRILLEHYYKENDPSVRLKIASL---LGLLSKTAGFSPDCIMDDAINILQNE 121

Query: 437 SSHKVLAQGMGTL 475
            SH+VLAQ + TL
Sbjct: 122 KSHQVLAQLLDTL 134


>BC030599-1|AAH30599.1|  782|Homo sapiens C3orf20 protein protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 164 GALLLHSLAYWRNVNRVMKPYNF-YFEYLTCLQFQESDLEEAIKKLSKHFQSEEESV 331
           G L   SLA    +  V  PY   Y  Y  CL F  S  +EA KK+ K   +E+ S+
Sbjct: 82  GQLWKESLANMSAIG-VNSPYQLIYHSYTACLSFSLSAGKEAKKKIGKSRTTEDVSM 137


>BC098580-1|AAH98580.1|  653|Homo sapiens Rho GTPase activating
           protein 24 protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 191 YWRNVNRVMKPYNFYFEYLTCLQFQESDLEEAIKKLSKHFQSEEESVVRVKILWLFC 361
           Y R +   + PY  Y ++L+C +    + E  +K+L+K  Q +   VV   +L   C
Sbjct: 119 YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAK--QVKSLPVVNYNLLKYIC 173


>AK091196-1|BAC03606.1|  748|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33877 fis, clone CTONG2007072, weakly similar to
           N-CHIMAERIN. ).
          Length = 748

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 191 YWRNVNRVMKPYNFYFEYLTCLQFQESDLEEAIKKLSKHFQSEEESVVRVKILWLFC 361
           Y R +   + PY  Y ++L+C +    + E  +K+L+K  Q +   VV   +L   C
Sbjct: 214 YLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAK--QVKSLPVVNYNLLKYIC 268


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,609,160
Number of Sequences: 237096
Number of extensions: 1240895
Number of successful extensions: 2389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2389
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)