Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K09
         (478 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   5.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   5.3  
Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical...    27   9.2  
AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z93389-7|CAJ43450.2|  201|Caenorhabditis elegans Hypothetical
           protein T13F3.9 protein.
          Length = 201

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 352 PQYLNPHN*LLLRLEVLGQFFDCFFQIRLLKLKTSQIFEV 233
           P++ N +  +++ + +L  FF CFF + + +    ++F+V
Sbjct: 158 PEFCNDYQRMIIAIFMLCLFFICFFVVLVPRFTRRKMFQV 197


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 99  KLSQCSFLYQRSHFEYSDRKIFW 31
           KL+   F+Y    F+Y DRKIFW
Sbjct: 419 KLASGEFIYGID-FDYGDRKIFW 440


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 99  KLSQCSFLYQRSHFEYSDRKIFW 31
           KL+   F+Y    F+Y DRKIFW
Sbjct: 419 KLASGEFIYGID-FDYGDRKIFW 440


>Z68882-9|CAD56233.1|  683|Caenorhabditis elegans Hypothetical
           protein C47E12.6b protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 224 KASSLDLHFSNKPTNAAAELPIKGFLAKCNFFAGG 120
           K+ SL+   S K  + AAEL    F  KC + +GG
Sbjct: 171 KSYSLETGASGKHIDTAAELKCDNFDTKCRWRSGG 205


>Z68882-8|CAD56234.1|  738|Caenorhabditis elegans Hypothetical
           protein C47E12.6a protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 224 KASSLDLHFSNKPTNAAAELPIKGFLAKCNFFAGG 120
           K+ SL+   S K  + AAEL    F  KC + +GG
Sbjct: 226 KSYSLETGASGKHIDTAAELKCDNFDTKCRWRSGG 260


>Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical
           protein C01H6.3 protein.
          Length = 187

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 464 YLELGPCVMIHSSVNELSHQSNCLNSHMDILTQ 366
           +LE   C  ++S  + L H+ NC+ S   IL Q
Sbjct: 4   FLECPHCQRLYSKHSLLIHEKNCIESMHKILEQ 36


>AL117195-16|CAB55026.1|  186|Caenorhabditis elegans Hypothetical
           protein Y57A10A.23 protein.
          Length = 186

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 260 FQESDLEEAIKKLSKHF 310
           FQ+S+ ++A KKLS+HF
Sbjct: 75  FQQSNAKKAFKKLSEHF 91


>AF016424-1|AAB65331.2|  617|Caenorhabditis elegans Hypothetical
           protein F39G3.6 protein.
          Length = 617

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +2

Query: 215 MKPYNFYFEYLTCLQFQESDLEEAIKKLSKHFQSEEESVVRVKILWLFCDIGLECPYANL 394
           M P  F   YL  L  +  +LE     L+K    +E + V+ ++  + C    EC  +++
Sbjct: 555 MYPLGFLNLYLHYLIQKPDELEHL--NLNKKKAEKEMNFVKKRLNMMKCT---ECHVSSI 609

Query: 395 NNLIDETI 418
           N+LI ETI
Sbjct: 610 NSLICETI 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,938
Number of Sequences: 27780
Number of extensions: 198770
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)