Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K08
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    43   3e-05
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    31   0.16 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.5  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
 Frame = +2

Query: 110 TQVTAKPISETCVLGGTHQDTDYNTEVDENDKEFILEGCKIMVPAL------KNAEHLSD 271
           T +  +P++   + GG  Q  +++ E+   D   IL+    ++P L      + AE + +
Sbjct: 231 TYIIPRPLNGGVICGGFMQPGNWDREIHPEDTLDILKRTSALMPELFHGKGPEGAEIIQE 290

Query: 272 WAGLRPGR---TEIRLDAEKRDGKLFVHNYGHGGSGLTLFWGCATDAL 406
             G RP R     + LD         VH+YG  G+G    +G A D++
Sbjct: 291 CVGFRPSRKGGARVELDVVPGTSVPLVHDYGASGTGYQAGYGMALDSV 338


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 197 NDKEFILEGCKIMVPALK 250
           NDK F LEGC+ MVP +K
Sbjct: 267 NDKRFGLEGCEAMVPGMK 284


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 221 GCKIMVPALKNAEHLSDWAGLRPGRTEIRLDAEKRDGKLFVHNYGHGGS 367
           G KI VP+ K +    D+  L  G+        K+D +   H++GH  S
Sbjct: 681 GVKISVPSAKMSYKDLDYVELMTGKKVYSRTERKKDTQKQSHDHGHSHS 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,021
Number of Sequences: 5004
Number of extensions: 41379
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)