Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K08
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1614 + 34786296-34786315,34787432-34788347,34788426-347889...    33   0.16 
07_01_0888 + 7398538-7399405,7400232-7400333,7400463-7400641,740...    31   0.65 
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287...    31   0.85 
01_01_0077 - 585670-585787,585921-586687                               30   1.5  
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826...    27   8.0  

>04_04_1614 +
           34786296-34786315,34787432-34788347,34788426-34788950,
           34789065-34789442,34790435-34790740
          Length = 714

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 89  NSRESLYTQVTAKPISETCVLGGTHQDTDYNTEVDENDKEFILE-GCKIMVPAL 247
           NS    Y  +  K  + T  L  THQ TD+    +EN+  ++ E G K+ V  L
Sbjct: 534 NSELEQYNSLMRKAEAATASLAATHQPTDFTFGDEENESSYVPEIGDKVYVEGL 587


>07_01_0888 +
           7398538-7399405,7400232-7400333,7400463-7400641,
           7400899-7400959,7401207-7401444,7401649-7401802,
           7401971-7402249
          Length = 626

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +1

Query: 64  RCYLLVRIQFEREFVHSSNGQADFRNMRSRRDPSRYGL 177
           RC L    Q + EF     G   F NM S RD S++GL
Sbjct: 258 RCSLWYHYQTDGEFFAGEPGVLAFLNMPSSRDESKFGL 295


>09_04_0593 -
           18825741-18826702,18826994-18827875,18828687-18828775,
           18828942-18829080,18829405-18829531,18829629-18829838
          Length = 802

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = +2

Query: 80  LGYNSRESLYTQVTAKPISETCVLGGTHQDTDYNTEVDENDKEFILEGCKIMVPALKNAE 259
           + YN++E L   V  KP S  C++  T  + D+   +D  + E + +  K  VP+ K A 
Sbjct: 629 VAYNNKEFLIDIVETKPASAVCII-ETDCEVDFAPPLDYKEPEKVQQ--KPSVPSSKAAS 685

Query: 260 HLSDWAGLRPGRTEIRLDAEKRDGK 334
              D     P          + DGK
Sbjct: 686 EDQDQIKDEPEFRAFTGSGNRLDGK 710


>01_01_0077 - 585670-585787,585921-586687
          Length = 294

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 390 QPQNNVSPLPPCP*LWTKSFPSLFSASNLISVRPGLSPAQSLKCSA 253
           QP N+  P+PP P L  ++  ++ +A  ++S  P  S AQ    +A
Sbjct: 18  QPHNHHPPVPPPPKLGRRAALAIAAAPAILSATPAPSRAQEAAAAA 63


>04_01_0628 -
           8266494-8266501,8266578-8266875,8268055-8268313,
           8268892-8269052,8269553-8269884,8270947-8271265,
           8271335-8271420,8271600-8271684
          Length = 515

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 185 EVDENDKEFILEG-CKIMVPALKNAEHLSDWAGLRP 289
           E  E++ +FIL+  C  +   ++ ++ LS W+G+RP
Sbjct: 254 EPHEDEIQFILDAICDYLNVQVRRSDVLSAWSGIRP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,061
Number of Sequences: 37544
Number of extensions: 258398
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)