Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K07
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    62   3e-10
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    56   1e-08
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    54   5e-08
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    36   0.025
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     29   2.2  
08_02_0695 + 20122838-20122949,20123238-20123335,20123520-201236...    27   6.6  

>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +2

Query: 56  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 235
           + L +V +  GL +L++YL  RSY+SGY  S+ D+ VF  +   PAAS  +V RWY HI+
Sbjct: 22  ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81

Query: 236 S 238
           +
Sbjct: 82  A 82


>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)
 Frame = +2

Query: 68  DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIAS 238
           D+ TA GL  L Q+L+ ++YVSG   S+ DIKVF  V   P A  P+  RWY  +A+
Sbjct: 7   DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 22/55 (40%), Positives = 35/55 (63%)
 Frame = +2

Query: 68  DVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHI 232
           +V +  GL +L++YL  RSY+SGY  S  D+ V+      P++S  +V RW++HI
Sbjct: 7   NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +2

Query: 89  LNELNQYLAERSYV--SGYTPSQADIKVFEQV-------GKVPAASLPHVLRWYSHI 232
           L  LNQ L+++S +  +G+ PS ADI VF  +       G+      PHVLRW  +I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = +2

Query: 80  AQGLNELNQYLAERSYVSGYTPSQADIKVFEQV---GKVPAASL----PHVLRWYSHIAS 238
           AQ L+  + +LA   Y++G   S AD      +    K P A L    PHV  W+  I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204

Query: 239 YTPAERKT 262
             PA +KT
Sbjct: 205 -RPAWKKT 211


>08_02_0695 +
           20122838-20122949,20123238-20123335,20123520-20123696,
           20123790-20123890,20124049-20124124,20124213-20124272,
           20124362-20124546,20124638-20124734,20124817-20124903,
           20124989-20125047,20125157-20125248,20125436-20125513,
           20125617-20125777,20125880-20126098
          Length = 533

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 104 QYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHV 211
           QY  E + V+GY P     + F  +  VP AS P V
Sbjct: 441 QYFNEYTSVAGYGPVHTGARWFNDMINVPFASKPFV 476


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,062,066
Number of Sequences: 37544
Number of extensions: 199657
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)