Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K06
(439 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.045
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.045
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.045
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 28 0.045
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 27 0.059
EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxyla... 21 6.8
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 21 6.8
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 21 6.8
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 21 6.8
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 20 9.0
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 20 9.0
AY920544-1|AAX62142.1| 463|Tribolium castaneum cytochrome P450 ... 20 9.0
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.045
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 322 CLAVPPAIIQSSWKND-TWMPW 260
CL VPP I +S+ K D TW P+
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPF 137
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.045
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 322 CLAVPPAIIQSSWKND-TWMPW 260
CL VPP I +S+ K D TW P+
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPF 137
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.045
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 322 CLAVPPAIIQSSWKND-TWMPW 260
CL VPP I +S+ K D TW P+
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPF 137
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 0.045
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 322 CLAVPPAIIQSSWKND-TWMPW 260
CL VPP I +S+ K D TW P+
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPF 137
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 27.5 bits (58), Expect = 0.059
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 322 CLAVPPAIIQSSWKND-TWMPW 260
CL VPP I +S+ K D TW P+
Sbjct: 116 CLYVPPGIFKSTCKIDITWFPF 137
>EU019710-1|ABU25222.1| 475|Tribolium castaneum dopa decarboxylase
protein.
Length = 475
Score = 20.6 bits (41), Expect = 6.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -1
Query: 91 WHLPDLKSHSITTPSSPAVI 32
WH P ++ T S PA++
Sbjct: 71 WHSPRFHAYFPTANSYPAIV 90
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 369 VSPTTVYSAVLRTSPNNVLAIA 434
++P+ +Y + R+SP AIA
Sbjct: 239 MAPSVMYPHLNRSSPTTATAIA 260
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 369 VSPTTVYSAVLRTSPNNVLAIA 434
++P+ +Y + R+SP AIA
Sbjct: 187 MAPSVMYPHLNRSSPTTATAIA 208
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 20.6 bits (41), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 369 VSPTTVYSAVLRTSPNNVLAIA 434
++P+ +Y + R+SP AIA
Sbjct: 370 MAPSVMYPHLNRSSPTTATAIA 391
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 20.2 bits (40), Expect = 9.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 131 ARYWKMDWFRFLN 169
A YW MDW L+
Sbjct: 628 AWYWVMDWSDMLS 640
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 20.2 bits (40), Expect = 9.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 313 VPPAIIQSSWKNDTWMPWSGISNTVTASK 227
VPP I+ + D+ G+S T SK
Sbjct: 601 VPPQILPFDFGEDSINEGDGVSVQCTVSK 629
>AY920544-1|AAX62142.1| 463|Tribolium castaneum cytochrome P450
monooxygenase protein.
Length = 463
Score = 20.2 bits (40), Expect = 9.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Frame = -2
Query: 123 LYYQCGVPTYCGIYQISNPTASLHHLHL 40
+Y Q Y G Y PT L + L
Sbjct: 18 IYRQFPTDRYVGYYHFMTPTLLLRDVEL 45
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,345
Number of Sequences: 336
Number of extensions: 2397
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 9775509
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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