Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K03
(394 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 1.0
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 1.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 2.4
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 4.2
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 25 4.2
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 24 7.3
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 24 7.3
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 24 7.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 24 9.7
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 24 9.7
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 24 9.7
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.1 bits (57), Expect = 1.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 37 LIKMFSVFFWSM*SYFYSVILE*AFVGILSLL 132
+ ++FS+ WSM SY+Y I + ++S+L
Sbjct: 336 IFQVFSIILWSMDSYYYYAICI-LIISVVSIL 366
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 12 KFKRLERSSYKNVLRFFLEYVIVFLLCYIR 101
K+K + R Y +++ FL YV V ++CY++
Sbjct: 26 KYKIIHRLLYISIIFLFLNYV-VDIVCYVK 54
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 309 NDFINYV*CIRQ*VTCKCTIGGKANVNR 392
N+FI+ V + V C+CT KAN+ R
Sbjct: 728 NEFIDIVSDLSSVVICRCTPTQKANMTR 755
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 4.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 393 NDLHSPYPQ*YIYKLLTALYI 331
N+LHSP+P + Y LL + YI
Sbjct: 482 NELHSPFPAEF-YVLLPSFYI 501
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.0 bits (52), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 246 LGCNKNQKPYKGLSYACNKFDL 181
L C K+ P+ L ACNKFDL
Sbjct: 133 LKCRKHHVPH--LLIACNKFDL 152
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 50 SPFFFGVCNRIFTL 91
SPF GVC R+FT+
Sbjct: 48 SPFRRGVCTRVFTV 61
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 72 VIVFLLCYIRVSVCWYTKFTI 134
V++FLL Y+R+S+ Y I
Sbjct: 126 VLIFLLAYLRISIDRYLPIAI 146
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 350 YSLPYTSNIVNEVINI*KTTKVKPQILYLP 261
YSL ++ + + N +T KV PQI + P
Sbjct: 680 YSLESGNSSLKPIYNFCETGKVTPQIYFAP 709
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 225 FGFYYNLNIIFIR*IQYLWLY 287
FG+Y+N II +R I L+ Y
Sbjct: 139 FGYYFNTLIILLRFIAGLFYY 159
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 137 LNSKLSIPTNAYSNITE*KYDYILQKKTENIFIRRTLK 24
L S +P I E + DY + +NIFI + LK
Sbjct: 670 LQSNEKVPFPRPGEIYEKRCDYFSKYACQNIFISKPLK 707
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.8 bits (49), Expect = 9.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 138 GIYRVARNSFFFPLIDQICYKRTISLYMVFGFYYNLNIIFIR*IQYL 278
GI+ +N F L + I++ VFGF LN + I I L
Sbjct: 677 GIFNNIKNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINIL 723
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,151
Number of Sequences: 5004
Number of extensions: 35267
Number of successful extensions: 80
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -