Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K03
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150...    28   2.3  
02_03_0275 + 17185335-17185895,17186460-17186516,17187360-171884...    27   5.4  

>09_02_0504 -
           10013784-10014041,10014558-10014660,10014932-10015093,
           10015416-10015549,10015633-10015716,10015839-10016129,
           10016362-10016694,10016823-10016965,10017273-10017429,
           10017513-10017616,10017728-10017888,10017971-10018287,
           10018396-10018677,10018759-10019226,10019338-10019391,
           10019689-10019742,10019943-10020021,10020108-10020196,
           10021153-10021273,10022321-10022637
          Length = 1236

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +3

Query: 45  NVLRFFLEYVIVFLLCYI 98
           NVLRFF +++++F+LC +
Sbjct: 591 NVLRFFRQFLVLFVLCEV 608


>02_03_0275 +
           17185335-17185895,17186460-17186516,17187360-17188454,
           17188527-17188607
          Length = 597

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 374 TPNSTFTSYSLPYTSNIVNEVI 309
           T  STFT +SLPY+ ++ N ++
Sbjct: 223 TNTSTFTDHSLPYSLSVPNHLL 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,152,837
Number of Sequences: 37544
Number of extensions: 160959
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)