Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K03
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    26   8.4  
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    26   8.4  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    26   8.4  

>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 24  LERSSYKNVLRFFLEYVIVFLLCYIRVSVCWYTKFTI*GIYRVARNSFF 170
           L +  +   L  F+E ++VFL+C       W   F   GI  +A N  F
Sbjct: 375 LSQIQFIKCLSLFIEPLLVFLICTSNTLEEWRIVFLTHGILLIAGNIIF 423


>Z81486-6|CAB03988.2|  309|Caenorhabditis elegans Hypothetical
           protein C53A5.8 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 198 KRTISLYMVFGFYYNLNIIFIR*IQYLWLYFRRFSY 305
           +RT+ L +V  FY  + ++F+  + +L+ + ++FSY
Sbjct: 15  ERTLWLTIVQMFYGTITVVFMLILLFLFQFSKKFSY 50


>Z93381-1|CAB07604.1|  509|Caenorhabditis elegans Hypothetical
           protein F28G4.1 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 204 TISLYMVFGFYYNLNIIFIR*IQYLWLYFRRF 299
           TI L  +F FYY L   FIR    ++ Y R+F
Sbjct: 8   TIFLITIFLFYYKLIYNFIRDRLRIYKYMRKF 39


>U51999-3|AAA96084.1|  306|Caenorhabditis elegans Hypothetical
           protein C43H6.7 protein.
          Length = 306

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +2

Query: 107 RLLVY*VYYLRDI*GCQK*FFFSPHRSNLLQAYDKPLYG---FWFLLQPKYHFYKVNTV 274
           + LV+ VY++         F   P+      A+   L G    +FL   +YH+YK  T+
Sbjct: 33  KFLVFFVYFISTFLAFTSFFIIIPYEQLYKPAWLLLLLGTCGLYFLFNIQYHYYKARTI 91


>Z75552-3|CAA99940.1|  465|Caenorhabditis elegans Hypothetical
           protein W04D2.3 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 201 RTISLYMVFGFYYNLNIIFIR*IQYLWLYFRRFS 302
           R +S Y    F+  L   F R   YLW YF   S
Sbjct: 99  RQLSYYQWVPFFLLLQAAFFRAPSYLWKYFSNHS 132


>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 210 SLYMVFGFYYNLNIIFIR*IQYLWLYFRRFSY 305
           S Y +FGF + L +IF+   Q L ++   F Y
Sbjct: 17  SFYAIFGFTFQLTLIFLI-FQKLPVFLSNFKY 47


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
 Frame = +3

Query: 30  RSSYKNVLRFFLE---YVIVFLLCYIRVSVCWYTKFTI*GIYRVARNSFFFPLIDQICYK 200
           R  Y N   F LE   + I FL  + +  + W   +    I+R   N + FP++ +I + 
Sbjct: 346 RRPYPNDPLFLLENRNFPIFFLRSFEKTPIFWEKIYPFFRIFRFFSNFYTFPVVFEIDF- 404

Query: 201 RTISLYMVFGFYYNLNIIFIR*IQYLWLYFRRFSYVN 311
             + +++V       NI+        +LYF RF  V+
Sbjct: 405 --LPIFLV------ANIVI---FHSFYLYFPRFFQVS 430


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 207 ISLYMVFGFYYNL----NIIFIR*IQYLWLYFRRFSYVNDFIN 323
           IS YMV    + L    +++F + I Y W  F++ S  ++F N
Sbjct: 170 ISFYMVNSLIFYLAITFSLLFFKKIFYAWKRFKQGSLASEFFN 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,395
Number of Sequences: 27780
Number of extensions: 183508
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)