Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K02
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   3.2  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos...    25   9.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   9.7  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 76  LGAVPRGAVPPRADRVLRDLQG 141
           LG V RG +P   DR+L  LQG
Sbjct: 476 LGHVQRGGIPCAYDRMLATLQG 497


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 107 GGTAPRGTAPSGRGRGSAVGTPRSPMTRS 21
           GGT   G  PS    GSA+  P++   R+
Sbjct: 409 GGTGYTGVTPSHAANGSALAAPQATPFRT 437


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 455  RITLAEWGKCLQLDEYELEDR 517
            +  L+ W   L+L+EY+L +R
Sbjct: 3225 KFELSNWNNLLKLEEYKLSER 3245


>SPBC31F10.09c |nut2|med10|mediator complex subunit
           Med10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  PRGAVPPRADRVLRDLQGNAGVQRERNVRLP 180
           P  A+P   D ++RDL+    + R+ N  +P
Sbjct: 34  PSDAIPESLDTLIRDLKSLPDISRKVNNLIP 64


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = -1

Query: 200 ASRACAAGSLTFRSRCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSP 33
           AS   A  S  + S   P     S +  S+RG T    T P    RG    +  +P
Sbjct: 264 ASSTIAEVSPMYGSHAAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYNP 319


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 311 IWKWCDLDAHDNDRFVSRHELFPIRAPL---MSLEHCI 415
           +WKW  +     D F+      P+R  +   MS++ C+
Sbjct: 75  LWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,285
Number of Sequences: 5004
Number of extensions: 33395
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)