Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K02
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072) 45 5e-05
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09) 38 0.004
SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.017
SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16) 33 0.20
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 33 0.20
SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26) 31 0.47
SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24) 29 1.9
SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0) 29 2.5
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 29 3.3
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 3.3
SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07) 28 4.4
SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14) 28 4.4
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 5.8
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_27392| Best HMM Match : Kazal_1 (HMM E-Value=0.00072)
Length = 196
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +2
Query: 137 REMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNA-AI 313
+ + EC+ + + F R +W+ ++ RR + +Y E E NL A
Sbjct: 69 QNVSECARDNLLQFGERYLEWIL-----ISRRRLVNRYYQVKESEKGHNLPPDMRKELAQ 123
Query: 314 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 484
W++ +D + D +S E+ I PL+ E CI F+ CD +++ I EW C
Sbjct: 124 WEFDRVD-FNRDGVLSGREINSIIGPLLFHERCIYGFVMSCDVNKNSVIDKQEWLLC 179
>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 43.6 bits (98), Expect = 1e-04
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Frame = +2
Query: 29 SSDCEVYRQRCLCLDHSELCRGAQYHHVQIEYYGTCREMPECSENEMSDFPRRMRDWLFN 208
+S+CE+++Q C D A H + G+ +C + DF R +WL
Sbjct: 644 ASECEMHKQAC---DFGFFT--AVKHKGKCTKKGSNIIGRQCPVERLLDFHSRYLEWLLV 698
Query: 209 IMRDLAERRELTPHYLRMEREA-ESNLTRRWTNAAIWKWCDLDAHDNDRFVSRHELFPIR 385
++ + H + R A E L +W++ + DA+ ND+ + HE ++
Sbjct: 699 AYKE-------SKHAVMDSRVALEGILDEEIKRIIMWEFDNQDANRNDQ-LDEHE---VK 747
Query: 386 APLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 484
+ + E C+ F+D CD D IT EW C
Sbjct: 748 SMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 780
>SB_56344| Best HMM Match : Kazal_2 (HMM E-Value=1.5e-09)
Length = 217
Score = 38.3 bits (85), Expect = 0.004
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 161 NEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAESNLTRRWTNAAIWKW-CDLDA 337
+ MS F R +W +A+ + +Y R + + ++ AI KW D +
Sbjct: 103 DHMSQFRDRYLEWAH-----VAKEQTKDQNYTLTRRIHDMTMRQK---VAIAKWEFDRND 154
Query: 338 HDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQLDEYE 505
D D + E+ I A +M E C A FL CD + I+ +EW C L E E
Sbjct: 155 LDKDNALEGAEIDNILA-MMIYEPCAAGFLWSCDLNRKQGISRSEWDMCFTLAERE 209
>SB_23132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +2
Query: 314 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKC 484
W++ + DA+ ND+ + HE +++ + E C+ F+D CD D IT EW C
Sbjct: 1 WEFDNQDANRNDQ-LDEHE---VKSMIDLREPCMVGFMDACDFDGHPGITRHEWNAC 53
>SB_58159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 443
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 314 WKWCDLDAHDNDRFVSRHELFPIRAPLMSLE-----HCIAPFLDQCDADEDHRITLAEWG 478
WK+ LD++ DR ++ E F + M + C L CD D+D+ ++L EW
Sbjct: 373 WKFHQLDSN-RDRIINSREFFVVSMKKMLGKIKRGRKCSRKLLADCDFDKDNGLSLNEWS 431
Query: 479 KCL 487
CL
Sbjct: 432 YCL 434
>SB_20364| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.8e-16)
Length = 187
Score = 32.7 bits (71), Expect = 0.20
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 311 IWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEH---CIAPFLDQCDADEDHRITLAEWGK 481
+WK+ LD + D F+ EL H C F+ CD ++D RI+ EW
Sbjct: 50 MWKFNQLDTNA-DYFLEWSELHGFLRMSKKAIHPKKCSKTFVGYCDENQDQRISRNEWYA 108
Query: 482 CLQLDE 499
C + E
Sbjct: 109 CFGVQE 114
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 149 PAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRSR*SLPR 3
PA P S++T +AR PRGT + + + +PR + S PR
Sbjct: 49 PATPSSSKTTSTARSTVKPRGTTSAASSAATGLVSPRGSIAGSSQVQPR 97
>SB_59779| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.2e-26)
Length = 452
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 341 DNDRFVSRHELFPIRAPLMSLEHCIAPFLDQCDADEDHRITLAEWGKCLQL 493
D D + EL ++ + E+CI F ++CDA +D + +L E QL
Sbjct: 34 DGDHVLGPEELAEVKE--IPNENCITQFFEKCDATKDGQFSLLESANASQL 82
>SB_42859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1370
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -1
Query: 203 TASRACAAGSLTFRSRCTP---AFPCKSRS--TRSARGGTAPRGTAPSGRGRGSA 54
T R G T RS CTP AF +S + TRS+ G APR + +G SA
Sbjct: 885 TEGRQPRPGLATLRSSCTPTSRAFALQSTACQTRSSARGCAPRISGGRRKGGSSA 939
>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
Length = 467
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 188 CAAGSLTFRSRCTPAFPCKSR-STRSARGGTAPRGTAPS 75
C S R TP PCKS+ S+R GT+P T S
Sbjct: 413 CTTTSSPIRFSSTPGPPCKSKSSSRGISSGTSPVSTNSS 451
>SB_11910| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 456
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 308 AIWKWCDLDAHDNDRFVSRHELFPIRAPLMSL 403
A+WKW + D H FV+ + +R PLM+L
Sbjct: 70 AVWKWLNHDFHGRSMFVADIMQY-VRFPLMNL 100
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 137 REMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYLRMEREAE 277
R++ E S +E DF RR+R N + DL E++ LR++ A+
Sbjct: 137 RQLVEKSRDETGDFERRLR----NEIHDLKEQKRKAEESLRLKTAAD 179
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 158 RCTPAFPCKSRSTRSARGGTAPRGTAPSGRGRGSAVGTPRSPMTRSR*SLPR 3
+C+PA P ST +++ A T+P+ + A G P P ++R L R
Sbjct: 426 KCSPAKP----STPASKDAAAKPPTSPAPKPEDEATGPPNKPSYQARLGLAR 473
>SB_18961| Best HMM Match : zf-U1 (HMM E-Value=0.07)
Length = 844
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 149 PAFPCKSRSTRS-ARGGTAPRGTAPSGRGRGSAVGT 45
P P R R RGG+A RG +GRGRG G+
Sbjct: 770 PVTPLARRGRRGRGRGGSASRGKG-AGRGRGKGRGS 804
>SB_51009| Best HMM Match : 7tm_1 (HMM E-Value=2.8e-14)
Length = 579
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 14 FNETWSSDCEVYRQRC-LCLDHSELCRGAQYHHVQIEYYGTCREMPECSENEMSDFPRRM 190
FN+ + + CE+++ C L + + GA + G M +C + + FP R
Sbjct: 158 FNQEFKNACEMHKYACKLQMSMAIKNAGACVKPTDPKMMG----MTDCPKWMLEQFPYRF 213
Query: 191 RDWLFNIMRDLA 226
DWL+ + R+L+
Sbjct: 214 LDWLY-LTRELS 224
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 28.3 bits (60), Expect = 4.4
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 7/149 (4%)
Frame = +2
Query: 71 DHSELCRGAQYH--HVQIEYYGTCREMPECSENEMSDFPRRMRDWLFNIMRDLAE----R 232
+H EL R A H + I G C + C E + RM +W+ LA +
Sbjct: 102 NHCELHRIACVHTKKITIRSKGPCEVV--CYERDRDQMRGRMIEWMQMQEESLANAAGYQ 159
Query: 233 RELTPHYLRMEREAESNLT-RRWTNAAIWKWCDLDAHDNDRFVSRHELFPIRAPLMSLEH 409
R L + +++ + L + T + + + D F++ P+ L
Sbjct: 160 RVLKRFFDMVDKNKDGKLNLKELTELVKYNQTVAEIREADEFIN-----PVLQGL----- 209
Query: 410 CIAPFLDQCDADEDHRITLAEWGKCLQLD 496
C + D DED +T E+ KCL D
Sbjct: 210 CSDALISITDDDEDTELTFKEFRKCLDPD 238
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -3
Query: 324 HHFQMAALVQRRVRLDSASRSMRR*WGVSSRRSARSRIMLNSQSRMRRGKS 172
H F+ +L + R R +SRS R G S R RSR +S S R +S
Sbjct: 628 HIFKPGSLRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRS 678
Score = 28.3 bits (60), Expect = 4.4
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Frame = -3
Query: 405 SRDMSGARIGNNSCRDTNLSLSCASRSH-----HFQMAALVQRRVRLDSASRSMRR*WGV 241
SRD G+R G R + S S SRS + +RR R S S S
Sbjct: 650 SRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRSRSSSHSSSSLSRSRS 709
Query: 240 SSRRSARSRIMLNSQSRMRRGKSDISFS 157
SR R R S+S R+GK S S
Sbjct: 710 RSRSRGRGRRRSRSRSSSRKGKRQRSRS 737
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 110 RGGTAPRGTAPSGRGRGSAVGTPRSPM 30
RGG APRG P G + G PR PM
Sbjct: 821 RGGMAPRGAVPRGM---APRGNPRLPM 844
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 25 LVIGLRGVPTALPLPRPLGAVPRGAVPP 108
+++ R +PT P P+P +P+G PP
Sbjct: 634 VLVNRRDLPTGPPPPKPPRTLPQGVPPP 661
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 116 SARGGTAPRGTAPSGRGRGSAVGTPR 39
S RGG RG + GRGRG G R
Sbjct: 35 SGRGGRGGRGGSGRGRGRGRGSGRGR 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,973
Number of Sequences: 59808
Number of extensions: 311335
Number of successful extensions: 1326
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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