Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K01
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    38   6e-05
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   7.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 37.9 bits (84), Expect = 6e-05
 Identities = 24/88 (27%), Positives = 47/88 (53%)
 Frame = +1

Query: 199 KVAVVTGANKGIGFGIVRGLCKRFDGVVYLTSRDEERGRKAVADLNKENIHPNYHQLDIT 378
           +VA+VTGAN GIG  ++  L  +   V+ +  + ++  +  V +L  +       Q D++
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKM-KTLVEELKSKPGKLVPLQCDLS 66

Query: 379 DRKSVETFRDYIKNKYDGIDILVNNAAI 462
           ++  +    ++++     IDIL+NNA I
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATI 94


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 281 TTPSKRLQSPLTIPNPMPLLAPV 213
           T PS    SP+  P+P+ L  PV
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPV 458


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +1

Query: 289 TSRDEERGRKAVADLNKENIHPNYHQLDITDRKSVETFRDYIKNKYDGIDILVNN 453
           T R+  R  K ++ L+ + IH N    +  +      + +Y  N Y+    L  N
Sbjct: 304 TERERSREPKIISSLSNKTIHNNN---NYNNNNYNNNYNNYNNNNYNNYKKLYYN 355


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +3

Query: 297 RRRTWKESSRRLE*RKYPSQLPPIGH 374
           RR  WK+  +       P  + P GH
Sbjct: 59  RRMKWKKEHKMASMNIVPYHMSPYGH 84


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 96  SLIQRYFISD*PWAFYTIASF*YCLS 19
           S +Q Y   D  W +YT      CLS
Sbjct: 112 SNLQLYLGGDLDWKYYTTNESHACLS 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,827
Number of Sequences: 438
Number of extensions: 2347
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)