Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J24
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964... 80 8e-16
01_05_0741 - 24821208-24821220,24821476-24821711,24822276-248225... 79 2e-15
03_02_0945 - 12614658-12614909,12615200-12615325,12616684-126168... 75 2e-14
08_01_0424 - 3746663-3746745,3747273-3747558,3747732-3748451 29 2.6
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 29 2.6
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 28 3.4
11_06_0298 - 22072391-22073863 28 4.5
04_04_1406 + 33340509-33340681,33342737-33342839,33342931-333431... 27 6.0
08_01_0425 - 3751326-3751408,3752361-3752646,3752820-3753137,375... 27 7.9
04_03_1041 - 21938347-21938529,21938618-21938773,21939291-219394... 27 7.9
03_05_0260 + 22468243-22468292,22469125-22469125,22469130-224692... 27 7.9
>03_02_0932 + 12495700-12495738,12495859-12496093,12496178-12496423,
12496519-12496572,12497329-12497589,12497750-12497802,
12497893-12498016,12498147-12498401,12498798-12499888,
12500001-12500007,12500316-12500445,12500617-12500731,
12500783-12500853,12501246-12501354,12501550-12501738,
12502519-12502644,12503048-12503563
Length = 1206
Score = 80.2 bits (189), Expect = 8e-16
Identities = 39/117 (33%), Positives = 68/117 (58%)
Frame = +2
Query: 128 ELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFPQPLQDPSEIDKL 307
+L E++LQP + ++ D I+FSDIL + + ++ G GPV PL+ + ++++
Sbjct: 913 DLVVEISLQPWKVFKP-DGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEV 971
Query: 308 QVDGAISRLQYVGDAITLTRHKIEGKVPLIGFTGAPFTLMGYMIEGGGSKTMAKTKE 478
+ + YVG A+ + R ++ + ++GF GAPFTL Y +EGG SK +K K+
Sbjct: 972 REFVPEEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKK 1028
>01_05_0741 -
24821208-24821220,24821476-24821711,24822276-24822560,
24822790-24822850,24823399-24823463,24823571-24823959,
24824059-24824188
Length = 392
Score = 79.0 bits (186), Expect = 2e-15
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Frame = +2
Query: 8 ALGKD-VDKVPVWVMRQAGRYLPEFQEVRSKHDFFTV-CRTPELACEVTLQPLRRYEHLD 181
A G+D + + P W+MRQAGRY+ E+Q + +H F T EL E+TLQP R + D
Sbjct: 52 ARGEDGLPRPPAWMMRQAGRYMAEYQALAKRHPSFRERSETTELIVEITLQPWRAFAP-D 110
Query: 182 ASIIFSDILVIPQALGMTVEMHPGVGPVFPQPLQDPSEIDKL-QVDGAISRLQYVGDAIT 358
I+FSDIL A+G+ ++ GPV P++ ++ +L +D +L++VG+++
Sbjct: 111 GVILFSDILTPLPAIGVPFDISDSKGPVIQSPVRSEEQVRELTPID--FEKLRFVGESLK 168
Query: 359 LTRHKI 376
+ R ++
Sbjct: 169 ILRTEL 174
Score = 40.3 bits (90), Expect = 8e-04
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 347 DAITLTRHKIEGKVPLIGFTGAPFTLMGYMIEGGGSKTMAKTK 475
D++ + I+G+ L+GF GAP+T+ Y++EGG + T K
Sbjct: 207 DSLKSFQQPIDGQAALLGFVGAPWTIATYVVEGGMTNTYTNIK 249
>03_02_0945 -
12614658-12614909,12615200-12615325,12616684-12616872,
12617059-12617169,12617629-12617744,12617861-12617966
Length = 299
Score = 75.4 bits (177), Expect = 2e-14
Identities = 44/143 (30%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Frame = +2
Query: 53 QAGRYLPEFQEVRSKHDFFTV-CRTPELACEVTLQPLRRYEHLDASIIFSDILVIPQALG 229
+AGR +Q + +H F +L E++LQP + + D +I+FSDIL +
Sbjct: 70 EAGR--ESYQLLCERHPSFCERSELVDLVVEISLQPWKVFTP-DGAILFSDILTPLPRMN 126
Query: 230 MTVEMHPGVGPVFPQPLQDPSEIDKLQVDGAISRLQYVGDAITLTRHKIEGKVPLIGFTG 409
+ ++ G G V PL+ + +++++ + YVG A+ + R +I + ++ F G
Sbjct: 127 IPFDIVKGKGSVIFDPLRTAAAVNEVREFVPEEWVPYVGQALNILREEINNEATVLSFVG 186
Query: 410 APFTLMGYMIEGGGSKTMAKTKE 478
APFTL Y +EGG SK +K K+
Sbjct: 187 APFTLASYCVEGGSSKNFSKIKK 209
>08_01_0424 - 3746663-3746745,3747273-3747558,3747732-3748451
Length = 362
Score = 28.7 bits (61), Expect = 2.6
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Frame = +2
Query: 86 VRSKHDFFTVCRTPELACEVTLQPLRRYEHLDASIIFSDILVIPQALGMT---VEMHPG- 253
+R + + C LAC ++ +E D + +++ +P + M + PG
Sbjct: 186 LRDRSGRYLRCNKSILACRRSISVDANFE--DEDTLLWEVVRVPPSEDMPELPIATQPGF 243
Query: 254 -VGPVFPQPLQDPSEIDKLQVDGAI-----SRLQYVGDAITLTRHKIEGKVPLIGFT 406
V FPQPL++ +D+ +D + +Q G ++ L R KI V FT
Sbjct: 244 FVRVCFPQPLREIQFVDEADLDNISEGENWATVQIRGRSVRLLREKIAELVGYDDFT 300
>01_07_0084 +
40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 149 LQPLRRYEHLDASIIFSDILVIPQ-ALGMTVEMHPGVGPVFPQPLQDPSE 295
++PLR E L+A I LV+PQ +L + V + PV P + P+E
Sbjct: 170 IEPLRTLEPLEAQQISLPHLVVPQISLQLPVVLQSCAIPVAPIGVMQPTE 219
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 248 PGVGPVFPQPLQDPSEIDKLQVDGAISRLQYVGDAIT 358
PGV P P +P ++ + + ISRL GD +T
Sbjct: 450 PGVKPALCDPDDNPDDVWYVNLKACISRLPENGDGLT 486
>11_06_0298 - 22072391-22073863
Length = 490
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 164 RYEHLDASIIFSDILVIPQALGMTVEMHPGVGPVFP 271
RY DA ++ S V P A + PGV PVFP
Sbjct: 217 RYRDADAILVNSFDAVEPDAARVLRHPKPGVPPVFP 252
>04_04_1406 +
33340509-33340681,33342737-33342839,33342931-33343156,
33343270-33343327,33343639-33343729
Length = 216
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 269 PQPLQDPSEIDKLQVDGAISRLQYVGDAITLTRHKIEGKVP 391
PQ DPS I KLQ D I+R + + R ++ K P
Sbjct: 153 PQVAADPSSICKLQADLPIARRHSLQRFLEKRRDRLVSKAP 193
>08_01_0425 -
3751326-3751408,3752361-3752646,3752820-3753137,
3753301-3753834
Length = 406
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Frame = +2
Query: 227 GMTVEMHPG--VGPVFPQPLQDPSEIDKLQVD----GAI-SRLQYVGDAITLTRHKIEGK 385
G+ + PG V FPQPL++ +D+ +D G I + ++ G ++ L R KI
Sbjct: 278 GLPIATQPGFFVRACFPQPLREIQFVDEADLDNTSEGEIWTTVEIRGRSVRLLREKIAEL 337
Query: 386 VPLIGFT 406
V FT
Sbjct: 338 VGYDDFT 344
>04_03_1041 -
21938347-21938529,21938618-21938773,21939291-21939408,
21939536-21940203,21941773-21941802
Length = 384
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 207 SISLNIIDASKCSYLRRGCNVTSQASSGVRQTVK 106
SI +++ KC++L NVTS SG R+ V+
Sbjct: 241 SIRFSVVFPCKCNFLNVLFNVTSLELSGFREMVR 274
>03_05_0260 +
22468243-22468292,22469125-22469125,22469130-22469285,
22469416-22469919
Length = 236
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 350 HRRHTVT*ILLHQLAIYLFQKDLEVVEETLVPHQDAFPQSYQEL 219
H ++ V ++ Q+ + Q D+EV++ ++ H++ F Q EL
Sbjct: 30 HNKNKVKLKMMVQMEKLVRQCDMEVMKMAMLKHEETFKQQVYEL 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,497
Number of Sequences: 37544
Number of extensions: 287252
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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