Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J23
         (466 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein.                  30   3.4  
BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD fin...    30   3.4  
AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguani...    30   3.4  

>M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein.
          Length = 1214

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 209 HDIDRKALLLQKIRKRYK---ATYKKKMIIFKMTFLIPILATCRKIL 78
           HD++R  LL++ IRKR K    T K + I  +M  L P L   RK L
Sbjct: 596 HDLERARLLVELIRKREKLKRETIKVQQIAMEMQ-LTPFLILLRKTL 641


>BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD finger
           containing, 1 protein.
          Length = 1220

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 209 HDIDRKALLLQKIRKRYK---ATYKKKMIIFKMTFLIPILATCRKIL 78
           HD++R  LL++ IRKR K    T K + I  +M  L P L   RK L
Sbjct: 596 HDLERARLLVELIRKREKLKRETIKVQQIAMEMQ-LTPFLILLRKTL 641


>AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguanine
           DNA glycosylase protein.
          Length = 1214

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 209 HDIDRKALLLQKIRKRYK---ATYKKKMIIFKMTFLIPILATCRKIL 78
           HD++R  LL++ IRKR K    T K + I  +M  L P L   RK L
Sbjct: 596 HDLERARLLVELIRKREKLKRETIKVQQIAMEMQ-LTPFLILLRKTL 641


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,347,142
Number of Sequences: 237096
Number of extensions: 894140
Number of successful extensions: 1341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)