Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J22
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    28   0.27 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   2.5  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   2.5  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   3.3  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    24   5.8  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    24   5.8  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    23   7.7  

>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 28.3 bits (60), Expect = 0.27
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 246 GLILRQTRVFALGFLLALP*IVLERIRRKSTNREI 142
           GL+LR+ +   LGFL  L  +V++ +  +S   +I
Sbjct: 680 GLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDI 714


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +1

Query: 130  FIKIYFTVCTFASYSF*NNLRKC--EKEAEGKYSGLTKDQTASLIQELRCLEETLEKC 297
            F+ IYFT C+    SF ++   C   K      +   K      IQ +   +E+LE C
Sbjct: 1139 FVDIYFTSCSPTEVSFLSDTDICLLSKSQSSGDTNNPKSFQLCKIQSISRKKESLELC 1196


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 262 PV*GLRFDPSSDQSICPRLPSRTSLDCSR 176
           PV  ++F+ +    I P+LP R   DC +
Sbjct: 141 PVNSVQFNDAYSTHISPKLPGRAYEDCQK 169


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 11  NISDKFKRLSVKLCI*FDFFFTWNP 85
           N  D ++     LCI + +FF W P
Sbjct: 56  NFQDNYRFYGTLLCICWLYFFIWYP 80


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 202 KEAEGKYSGLTKDQTASLIQELRCLEETLEK 294
           +  EG+YSGL       +++ L+ + E   K
Sbjct: 138 ENTEGEYSGLEHQSVPGVVESLKIITEYKSK 168


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
 Frame = +1

Query: 142 YF-TVCTFASYSF*NNLRKCEKEAEGK---------YSGLTKDQTASLIQELRCLEETLE 291
           YF T CT++  +F    R   K+ E           YSG +  Q AS +QE    + T E
Sbjct: 230 YFSTECTYSPEAFRGTARAMIKQLENIRPSSILDIIYSGESM-QLASSVQEQLPQQTTCE 288

Query: 292 KCGTI 306
           +CG I
Sbjct: 289 RCGFI 293


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 165 VLFVLEQSKEVREGSRGQIL 224
           ++FVLE+ + V +GS  Q++
Sbjct: 648 IIFVLEKGRVVEQGSHEQLM 667


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,205
Number of Sequences: 5004
Number of extensions: 18882
Number of successful extensions: 38
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)