Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J22
         (307 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0102 - 13418882-13419082,13419291-13419433,13419451-134196...    28   1.3  
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507...    28   1.7  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    28   1.7  
11_04_0207 - 14869288-14869291,14869484-14869776                       26   6.7  
01_06_0967 + 33461902-33462106,33462829-33463250                       26   6.7  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    25   8.9  

>07_03_0102 -
           13418882-13419082,13419291-13419433,13419451-13419647,
           13419811-13420395,13420712-13420908
          Length = 440

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 WSDEGSNRKPYTGVALLRGDIGEVR 299
           W DEG+ R PY    +L  D+G+ R
Sbjct: 269 WFDEGTMRHPYIQEGMLFTDVGQFR 293


>06_03_1406 -
           29949367-29949556,29949753-29949837,29950625-29950791,
           29951232-29952049
          Length = 419

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 295 TSPMSPLSSATPV*GLRFDPSSDQSICPRLP 203
           +SPMSP S ATPV      P   + +  R+P
Sbjct: 48  SSPMSPASPATPVDAYANAPPPSEDVLLRIP 78


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 163 ASYSF*NNLRKCEKEAEGKYSGLTKDQTASLIQELRCLEETLEKC 297
           A+ S   NL K   EA GK+  L ++ T S+ +E+  L +  E C
Sbjct: 644 AAQSTNGNLLKTTAEALGKWKDLLRNYTKSVDEEMEILLKFEEMC 688


>11_04_0207 - 14869288-14869291,14869484-14869776
          Length = 98

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +3

Query: 141 LFHGLYFCVLFVLEQSKEVREGSRGQILWSDEGSNRKPYTGVALLRGDI 287
           L HG +      +    E+   +  ++LW    SN + Y     LR D+
Sbjct: 19  LLHGGHCLKSLDMAMEMEMDSEAHSRMLWESSSSNGRRYISYDALRSDV 67


>01_06_0967 + 33461902-33462106,33462829-33463250
          Length = 208

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 295 TSPMSPLSSATPV*GLRFDPSSDQSI 218
           TSP SP S   P  G+   P+ +QSI
Sbjct: 156 TSPNSPPSPPPPPSGIEISPTPEQSI 181


>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 163 ASYSF*NNLRKCEKEAEGKYSGLTKDQTASLIQELRCLEETLEKC 297
           A+ SF   L +  +  EG    LTK++    ++ + CL+ ++ +C
Sbjct: 52  AALSFRRRLMQLAETKEGNAMTLTKERLWFCVRYVVCLDYSVRRC 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,746,711
Number of Sequences: 37544
Number of extensions: 103789
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)