Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J21
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.1  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.6  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.4  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.4  

>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 200 QTYSEVKSDYGIPYAPWLRHRSTKSEKLYPSMLQRSSESDYEPYYCLPVQY 352
           +  S++ +  G PY  W+ H   KS   +   L  S E++ +      VQ+
Sbjct: 429 EVVSQISASDGYPYVAWVEHCKDKSATSHIETLLESLETNSQIISLSKVQH 479


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 554 RHQQQVTXPSKPEMPWNHARRHSSSGNDVNVVECASHYRVGGSDLK 417
           +H+ QV  PSK   PW   +  SSSG     ++ +  Y   G   K
Sbjct: 48  QHEDQVRIPSKNAHPWEDTK--SSSGKSDESLDYSYKYYPRGDRSK 91


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 135 WIGTKSPLEEE*RSVTEAYQILKR 206
           WI  KSPLE+E  +  EA ++ +R
Sbjct: 33  WISMKSPLEKEIANEYEALKVTER 56


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 400 AVSEISFKSDPPTR*CDAHSTTFTSLPEEE*RRAWFHGISGFDGLVTCCW 549
           A+SE++F +    R    + + +   P+E  R  W   + G+  L+ C W
Sbjct: 476 AISEVTF-AFVSWRGLTYYMSNWEPPPKETDRNRWKAWLKGYSDLLECLW 524


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 248 WLRHRSTKSEKLYPSMLQRSSESDY 322
           WL + ST    LY   LQ   ESDY
Sbjct: 186 WLNYVSTNPNLLYDPELQLFVESDY 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,957
Number of Sequences: 5004
Number of extensions: 51981
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)