Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J21
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0470 - 23183925-23184743,23184929-23185153                       29   2.8  
02_01_0529 - 3846489-3847268                                           29   3.7  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    27   8.6  

>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 548 QQQVTXPSKPEM--PWNHAR---RHSSSGNDVNVVECASHYRVGGSDLKLISETATVVLI 384
           +++ T PS P    P  HA    RHS+ G   +     S  + GG DL L+ E     ++
Sbjct: 73  EERATRPSLPSPCHPLRHADDTLRHSACGTGTSAEARRSRLKSGGGDLILLRERP---IV 129

Query: 383 HH 378
           HH
Sbjct: 130 HH 131


>02_01_0529 - 3846489-3847268
          Length = 259

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 314 SDYEPYYCLPVQYGPTGQGLNYG 382
           +D  PYY +P Q GP G G+ YG
Sbjct: 206 ADTYPYYYVPAQQGP-GSGMMYG 227


>04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,
            7469505-7469622,7470035-7470067,7470400-7470474,
            7470887-7471043,7471142-7471230,7472041-7472294,
            7472977-7473148,7473250-7473333,7473626-7473730,
            7474055-7474363,7474622-7474756,7476236-7476317,
            7476423-7476502,7476622-7476783,7477071-7477138,
            7478422-7478502,7478634-7478760,7478816-7478879,
            7480808-7480854,7481042-7481335
          Length = 1149

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 255  DIGQLNPKSCIRLCYKGLPKAITNLIIVCQYSMDQQ 362
            DI  +  KSC     + L   I  L++VC Y+++ +
Sbjct: 1026 DIAVIGVKSCAEASKRFLESYINTLLMVCSYALEAE 1061


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,055
Number of Sequences: 37544
Number of extensions: 330151
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)