Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J21
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    27   7.7  
D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.        27   7.7  
AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride ...    27   7.7  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   7.7  

>Z37092-2|CAA85453.1|  555|Caenorhabditis elegans Hypothetical
           protein F44F4.2 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +2

Query: 170 KISDGSLSDTQTYSEVKSDYGIPYAPWLRHRSTKSEKLYPSMLQRSSESDYE 325
           K+ +     T  + E+   YG   A WLR R   S     S+LQR++   Y+
Sbjct: 102 KLMNAKEYPTINHDELAHRYGSSMAGWLRDRLVPSMSDCSSVLQRAAAEFYQ 153


>Z70037-3|CAC42352.1|  902|Caenorhabditis elegans Hypothetical
           protein T27D12.2b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   EGDVWSLDQLVYLLKL*YFVIT----TVYLPQGIYLRLFLI 115
           EGD+  ++ L+    L YF+I     T+Y+P GI++  F+I
Sbjct: 467 EGDMMPINSLLIYF-LFYFIIVPICITLYIPSGIFVPCFVI 506


>Z70037-2|CAA93879.2|  906|Caenorhabditis elegans Hypothetical
           protein T27D12.2a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   EGDVWSLDQLVYLLKL*YFVIT----TVYLPQGIYLRLFLI 115
           EGD+  ++ L+    L YF+I     T+Y+P GI++  F+I
Sbjct: 467 EGDMMPINSLLIYF-LFYFIIVPICITLYIPSGIFVPCFVI 506


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +2

Query: 116 LSLQITMDRDKITPRGGMKISDGSLSDTQTYSEVKSDYGIPYAPWLRHRSTKSEKLYPSM 295
           +S+ +T   + I   GG   S  S S T +  E  +   IP  P  RHR  K      S+
Sbjct: 291 VSVMVTKKEEPIYCSGGSDSSTESSSATPSSVEADTPPPIPSHPPARHRLVKKSSSSTSI 350

Query: 296 LQRSSESDYEPYYCLPVQYGPTGQG 370
                 S     + +   YG T +G
Sbjct: 351 SLNGIGSTPTRQFEITQAYGGTIRG 375


>D84668-1|BAA86913.1|  902|Caenorhabditis elegans CLH-1 protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   EGDVWSLDQLVYLLKL*YFVIT----TVYLPQGIYLRLFLI 115
           EGD+  ++ L+    L YF+I     T+Y+P GI++  F+I
Sbjct: 467 EGDMMPINSLLIYF-LFYFIIVPICITLYIPSGIFVPCFVI 506


>AF173170-1|AAF13163.1|  868|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = +2

Query: 5   EGDVWSLDQLVYLLKL*YFVIT----TVYLPQGIYLRLFLI 115
           EGD+  ++ L+    L YF+I     T+Y+P GI++  F+I
Sbjct: 429 EGDMMPINSLLIYF-LFYFIIVPICITLYIPSGIFVPCFVI 468


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -2

Query: 539 VTXPSKPEMPWN-----HARRHSSSGNDVNVVECASHY 441
           V  PS P MP+N     H   HS+  N+V+ V+  SHY
Sbjct: 683 VHMPSDP-MPYNKPHFGHGHGHSNGNNNVHSVKPTSHY 719


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,884,336
Number of Sequences: 27780
Number of extensions: 290895
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)