Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J20
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     52   2e-07
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           45   3e-05
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    44   5e-05
01_06_0098 - 26416768-26416998                                         31   0.64 
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    27   7.9  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 37/47 (78%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR K +S+
Sbjct: 19  SADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +2

Query: 11  AADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR K +S+
Sbjct: 20  AEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 20/47 (42%), Positives = 33/47 (70%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D+  IL SVG E D  K++ ++S+L GK++ E+I +GR K +S+
Sbjct: 212 SAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 20  VEKILSSVGIEADSEKLKKVISELNGKN 103
           V KI+ +V IEADS + K ++  L GK+
Sbjct: 21  VVKIIETVHIEADSAEFKSIVQRLTGKD 48


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 26  KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 145
           ++LS  GI++ S K    +  ++G N++EL  AG  +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,167,777
Number of Sequences: 37544
Number of extensions: 109496
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)