Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J20
         (480 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic ri...    66   6e-11
CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.                66   6e-11
CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.                66   6e-11
BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, larg...    66   6e-11
BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, larg...    66   6e-11
BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, larg...    66   6e-11
BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, larg...    66   6e-11
AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2 pr...    66   6e-11

>M17887-1|AAA36472.1|  115|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P2 mRNA, complete cds. ).
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>CR542248-1|CAG47044.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>CR542212-1|CAG47008.1|  115|Homo sapiens RPLP2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>BC062314-1|AAH62314.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>BC007573-1|AAH07573.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>BC005920-1|AAH05920.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>BC005354-1|AAH05354.1|  115|Homo sapiens ribosomal protein, large,
           P2 protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


>AB061837-1|BAB79475.1|  115|Homo sapiens ribosomal protein P2
           protein.
          Length = 115

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 30/47 (63%), Positives = 40/47 (85%)
 Frame = +2

Query: 8   AAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 148
           +A D++KIL SVGIEAD ++L KVISELNGKN+E++I  G GKL+S+
Sbjct: 19  SAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIGKLASV 65


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,204,214
Number of Sequences: 237096
Number of extensions: 544973
Number of successful extensions: 4929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4929
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)