Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J19
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   3.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   7.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 115  MCSALFINSVVPGQSFNCLSYYFVILVKHSLDWILL 222
            M +   I +++  Q FNCL Y  +  V     ++LL
Sbjct: 984  MAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLLL 1019


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 115  MCSALFINSVVPGQSFNCLSYYFVILVKHSLDWILL 222
            M +   I +++  Q FNCL Y  +  V     ++LL
Sbjct: 984  MAAEFIIAALLHPQEFNCLKYGVIYYVTVPSMYLLL 1019


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 224 SSKIQSRLCFTRITK**LRQLNDWPGTTLLMNK 126
           + ++ ++ C  ++    +  +N WPG  LL+ +
Sbjct: 6   ADRLMTQRCKEKLNTLAISVMNQWPGVRLLVTE 38


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/36 (22%), Positives = 18/36 (50%)
 Frame = -1

Query: 301 IRKTHFIHTNN*NVSALFINIPMINIPAKSSRGCVL 194
           +++ + +   N   S +FIN+P +       + CV+
Sbjct: 114 VKQCYHLQKINVQQSGIFINLPFLEHNLIRLKNCVI 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,962
Number of Sequences: 336
Number of extensions: 2115
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)