Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J19
         (547 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107477-1|AAI07478.1|  249|Homo sapiens BEAN protein protein.         32   1.5  
U00545-1|AAA17957.1|  127|Homo sapiens immunoglobulin heavy chai...    30   4.6  
DQ926650-1|ABI50509.1|  123|Homo sapiens immunoglobulin heavy ch...    29   8.0  
AY392903-1|AAS85844.1|  128|Homo sapiens immunoglobulin heavy ch...    29   8.0  

>BC107477-1|AAI07478.1|  249|Homo sapiens BEAN protein protein.
          Length = 249

 Score = 31.9 bits (69), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 117 HHYNHREPRRRSQEHGSLGSQNTFT 43
           HH++HR  R R  EHG +  ++T++
Sbjct: 70  HHHHHRRRRHREYEHGYVSDEHTYS 94


>U00545-1|AAA17957.1|  127|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 127

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 269 LKCIGFIYQYPDDKYSSKIQSRLCFTRIT 183
           L+C+  IY   D++YS  ++SRL  T+ T
Sbjct: 47  LECLALIYWDDDERYSPSLKSRLTITKDT 75


>DQ926650-1|ABI50509.1|  123|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 269 LKCIGFIYQYPDDKYSSKIQSRLCFTRIT 183
           L+C+  IY   D +YS  +Q+RL  T+ T
Sbjct: 47  LECLALIYWDDDKRYSPSLQNRLTITKDT 75


>AY392903-1|AAS85844.1|  128|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 8.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 269 LKCIGFIYQYPDDKYSSKIQSRLCFTRIT 183
           L+ + FIY   D +YSS ++SRL  T+ T
Sbjct: 35  LEWLAFIYWDDDKRYSSSLESRLTITKDT 63


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,778,990
Number of Sequences: 237096
Number of extensions: 1209018
Number of successful extensions: 2576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)