Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J19
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    29   2.9  
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    28   3.8  
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical ...    27   6.7  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    27   8.8  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    27   8.8  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    27   8.8  

>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 212 GFVFQQDNDPKHTSLHVRSWFQRRRV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 267

Query: 77  ST 72
           ++
Sbjct: 268 AS 269


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 241 GFVFQQDNDPKHTSLHVRSWFQRRRV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 296

Query: 77  ST 72
           ++
Sbjct: 297 AS 298


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 171 GFVFQQDNDPKHTSLHVRSWFQRRRV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 226

Query: 77  ST 72
           ++
Sbjct: 227 AS 228


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 171 GFVFQQDNDPKHTSLHVRSWFQRRRV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 226

Query: 77  ST 72
           ++
Sbjct: 227 AS 228


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 171 GFVFQQDNDPKHTSLHVRSWFQRRHV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 226

Query: 77  ST 72
           ++
Sbjct: 227 AS 228


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 241 GFVFQQDNDPKHTSLHVRSWFQRRHV----HLLDWPSQSPDLNPIEHLWEKLERRLGGIR 296

Query: 77  ST 72
           ++
Sbjct: 297 AS 298


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 257 GFIYQYPDDKYSSKIQSRLCFTRITK**LRQLNDWPGTTLLMNKAEHITIITGNRAGGHR 78
           GF++Q  +D   + +  R  F R        L DWP  +  +N  EH+      R GG R
Sbjct: 241 GFVFQQDNDPKHTSLHVRSWFQRRHV----HLLDWPSQSPDLNPIEHLWEELERRLGGIR 296

Query: 77  ST 72
           ++
Sbjct: 297 AS 298


>AF016423-6|AAB65325.1|  258|Caenorhabditis elegans Hypothetical
           protein F40A3.6 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -3

Query: 314 SQYLHQKDPFYTHQ*LKCIG--FIY--QYPDDKYSSKIQSRLCFTR 189
           S YL+Q  P+   Q  + IG  F+     P DK+ SKI+  L   R
Sbjct: 208 SPYLYQSHPYVRSQDSRIIGSNFVQLTSRPKDKFISKIEETLAMVR 253


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 340  DPRRDTVTTRPVVAAAWVDTED*AVSVEELEAGSAAVMVDSPQEA*APAVSAVDSHPEDS 519
            D  +D+    PV++A  V+++D      ++ + SAA  V S   A A   SA D  P D 
Sbjct: 1769 DETQDSAEAPPVLSAE-VNSDD----SNDVPSTSAAAAVSSETAADAEPASAEDQAPTDE 1823

Query: 520  P 522
            P
Sbjct: 1824 P 1824


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 340  DPRRDTVTTRPVVAAAWVDTED*AVSVEELEAGSAAVMVDSPQEA*APAVSAVDSHPEDS 519
            D  +D+    PV++A  V+++D      ++ + SAA  V S   A A   SA D  P D 
Sbjct: 1769 DETQDSAEAPPVLSAE-VNSDD----SNDVPSTSAAAAVSSETAADAEPASAEDQAPTDE 1823

Query: 520  P 522
            P
Sbjct: 1824 P 1824


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 352  DTVTTRPVVAAAWVDTED*AVSVEELEAGSAAVMVDSPQEA*APAVSAV--DSHPEDSPH 525
            DT+TT          +ED  +  E +E G      ++PQ + A A S+V      ED   
Sbjct: 2866 DTLTTPAAAQVEDQASEDQHIEEEPMEVGEDDGAAEAPQSSAATAASSVAGTEEIEDVER 2925

Query: 526  QAV 534
            QAV
Sbjct: 2926 QAV 2928


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,733,454
Number of Sequences: 27780
Number of extensions: 193834
Number of successful extensions: 487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)