Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J18
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.73
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 1.7
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 26 3.9
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 26 3.9
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 26 5.1
SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz... 25 6.8
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 9.0
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 9.0
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 25 9.0
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.7 bits (61), Expect = 0.73
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 570 KLILNRSK*SNXDLYSSNSRFVATDRRLEVLESADVNHQAMFYLQTSGNCSFLTN 406
+++L R+ D YS + + V+ + +LESA + +Y+ G + LTN
Sbjct: 95 EVVLRRTIGLKKDEYSLDKKTVSKTEVINLLESAGFSRSNPYYIVPQGRVTSLTN 149
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 22 LKRVLN---KRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDR 156
++RVL +RP + V +E+P+ GN + + I+N D FT + R
Sbjct: 236 IQRVLTCDCQRPSYTVYIEDPIIGNGFSSAWNL-IKNSDGIFTPVESR 282
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 290 PIATKG*PSTVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 135
P+ PST+ FN SP+P A S+ + S K A +++N VN
Sbjct: 313 PVLQPPAPSTLQFNPSPSPAAPSYPP-------VDASVKQAADLDQAINFVN 357
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 492 DDLLLRIENYLSKGPXSTISIDLESIFCNINILNVKETM 608
D L + YLS+ P ++ SID +S F N I +E +
Sbjct: 54 DHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKL 92
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 3.9
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = +1
Query: 10 GRQILKRVLNKRPQWNVTLEEPVAGNYYPVVN----EIYIENDD----QRFTVLTDRAAG 165
GR +LKR+L K P+ +TL E V + + + E +++N D R V TD A
Sbjct: 382 GRDLLKRLLCKDPEQRITLVE-VKLHPWTLDGLKDPEKWLQNTDPSTVSRVEVSTDEVAS 440
Query: 166 GASLV 180
SLV
Sbjct: 441 AISLV 445
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 238 VGEALNETVLGQPLVAIGTHVIIQAKNDITIEKTKLELHTRPAVFVSDAKEI-ILREI 408
V + L + L Q G + KN+ T++ K LH F+ DA + +RE+
Sbjct: 153 VEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAALGAIREV 210
>SPCC550.06c |hsp10||mitochondrial heat shock protein
Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 154 RAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQA 312
+ A G L E ++ + R++ + G G E L QP VA+G V++ A
Sbjct: 28 KTASGIFLPEKSVEKLSEGRVI---SVGKGGYNKEGKLAQPSVAVGDRVLLPA 77
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 492 DDLLLRIENYLSKGPXSTISIDLESI 569
+ LL I + GP TIS D+E I
Sbjct: 560 EQLLFSISKVTTNGPSETISEDIEEI 585
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 133 FDRHSQYIFH*QLDNNSPQRVLPT*HSTEVFY 38
+ RH H LD NS ++ T HS +VF+
Sbjct: 1985 YPRHVPTDSHGSLDENSLGELVTTLHSLDVFF 2016
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 13 RQILKRVLNKRPQWNVTLEE 72
R++L+R L K P+ +T+EE
Sbjct: 305 RKLLERCLEKNPEKRITIEE 324
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,851
Number of Sequences: 5004
Number of extensions: 48968
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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