Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J18
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    86   2e-17
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    51   8e-07
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    51   8e-07
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    41   8e-04
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    29   2.7  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical protein
            F55D10.1 protein.
          Length = 955

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/100 (41%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
 Frame = +1

Query: 10   GRQILKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGE 189
            GRQ ++R  +    +  +  EP+AGNYYP+ +  YI++++ +F+V+TDRA G  +  +G 
Sbjct: 716  GRQAMERFFDGATSFEYSDTEPIAGNYYPITSFGYIKDENAQFSVITDRAQGMVA-SDGV 774

Query: 190  IQLMVHRRLLHDDAFGVGEALNETVL-GQPLVAIGTHVII 306
            +++M+HRR  +DD FGV EAL+E    G  LVA+G H+++
Sbjct: 775  VEIMLHRRCFYDDHFGVEEALDEPGKDGAGLVAMGKHIVL 814



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 450  LPDGLHLLTLEP-RGDDLLLRIEN-YLSKGPXSTISIDLESIFCNINILNVKETMLAANQ 623
            LP G+HLLTLE       L+R EN Y  +   S    D   IF N +I++ KE +L AN+
Sbjct: 862  LPIGIHLLTLEKWHKKSSLIRFENIYHGEEGNSIKEFDPTHIFTNFDIVSFKELLLGANR 921


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
            F58H1.1b protein.
          Length = 1145

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 22/62 (35%), Positives = 39/62 (62%)
 Frame = +1

Query: 73   PVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 252
            P   N+YP+   +YIE+D  R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + +
Sbjct: 915  PTQANFYPMSAGVYIEDDTTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGV 974

Query: 253  NE 258
             +
Sbjct: 975  RD 976


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
            F58H1.1a protein.
          Length = 1143

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 22/62 (35%), Positives = 39/62 (62%)
 Frame = +1

Query: 73   PVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 252
            P   N+YP+   +YIE+D  R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + +
Sbjct: 913  PTQANFYPMSAGVYIEDDTTRMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGV 972

Query: 253  NE 258
             +
Sbjct: 973  RD 974


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical protein
            F48C1.1 protein.
          Length = 1064

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 21/95 (22%), Positives = 43/95 (45%)
 Frame = +1

Query: 73   PVAGNYYPVVNEIYIENDDQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 252
            PV  NYYP+     +++  QR +++++   G   L  G +++ + R L  DD  G+G   
Sbjct: 839  PVQSNYYPMPTAAVLQSGKQRLSIVSNVEHGARFLESGTVEINIDRILNQDDGKGLGTGP 898

Query: 253  NETVLGQPLVAIGTHVIIQAKNDITIEKTKLELHT 357
            +   +    V +   +I  +      E ++   H+
Sbjct: 899  DAIPIDMKPVDMKFKLIFDSLESDPTENSRYSTHS 933


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 266 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 135
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   ARGGRQILKRVLNKRPQWNVTLEEPVAGNYYPVVNEIYIEND 126
           +R GR +LKRV      W  +   P A N+YP  N    E++
Sbjct: 511 SRSGRGVLKRVSEVFDCWFESGSMPYAQNHYPFENRKIFEDN 552


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 266 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 135
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,571
Number of Sequences: 27780
Number of extensions: 277291
Number of successful extensions: 694
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)