Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J17
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       30   0.19 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    29   0.34 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   2.4  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    27   2.4  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   3.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.1  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   5.5  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   9.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   9.5  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   9.5  

>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 402 KDKLLELDLAHFDIERALQTRWPEHNLIRYGSTTTGLALKSSDAD 536
           K+K   LD     ++R      P+  L+ +GS  +GLALK+SD D
Sbjct: 63  KEKRAALDTLRLCLKRIS----PDAELVAFGSLESGLALKNSDMD 103


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +3

Query: 351 RDFDDQIADIIDSALMTKDKLLELDLAHFDIERALQTRWPEHNLIRYGSTTTGLALKSSD 530
           R F   I   ID    T ++          I +A+  +WP+ +L  +GS  T L L +SD
Sbjct: 239 RIFHQDILHFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSD 298

Query: 531 AD 536
            D
Sbjct: 299 LD 300


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 174 KLFENRKKHQDCVKDENAT--LSEVK--ENNLLPENVSQELS 287
           K+FE + K +D VK+EN T  + E K  E N  P    +ELS
Sbjct: 734 KIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQPNLKKEELS 775


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 477 CVPAILFVKLSRCQSVPDPTLAIYLLSSKRNLLYL 373
           CVP++  +  SR   +PD   ++  +SSK  L  L
Sbjct: 31  CVPSVCTITYSRFHCLPDTLKSLLPMSSKTTLSML 65


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 252 NLLPENVSQELSLLILVMTISSTVREKMGIWQKRDFDDQIADIIDSALMTKDKLL-ELDL 428
           N++  ++  E SLL+L+  +     E    W + DF  Q+  +  S   T+ K + EL+ 
Sbjct: 289 NIVTSDIQNEKSLLLLIRDLKEKQTESFQDWNEVDF-LQLKGLEISPPPTRPKFIPELEF 347

Query: 429 AHFDIERALQ 458
                +RAL+
Sbjct: 348 PDNARKRALK 357


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 243  KENNLLPENVSQELSLLILVMTISSTVREKMGIWQKRDFD 362
            K N L+P NV   + +L+  +  ++T      I Q  DFD
Sbjct: 1236 KPNRLVPSNVKSNILVLLCKLLPTNTKWLHASISQTNDFD 1275


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 433 TLTSRELYKQDGRNTILSDMDQLPQALH*NQAMLTS 540
           ++T+ E   +   + ILSD+    QA+H NQ+ L S
Sbjct: 346 SVTTTESQNKFVNSQILSDLQVAKQAVHTNQSALVS 381


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 228 TLSEVKENNLLPENVSQEL 284
           T  +V+E NLLP+++ QE+
Sbjct: 40  TAQQVQEWNLLPQDIQQEI 58


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 346 CHIPIFSRTVELIVITNINRDSS*ETFSGSKLFSLTSLKVAF 221
           CHI I  +   + V +N   D   +   G+KL++L  +++ F
Sbjct: 331 CHIQIPDKEATITVGSNFEVDHFLKISVGNKLWTLNRVEIPF 372


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 183 ENRKKHQDCVKDE-NATLSEVKENNLLPENVSQELSLLILVMTISSTVREK 332
           ++R   ++CV+ + N  ++ + +  +  EN+ QE+S +I  +   ST + K
Sbjct: 471 DDRDAIKECVETQLNKQINLLVKKRVTEENLEQEISSIINDLPKISTTKRK 521


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 357 FDDQIADIIDSALMTKDKLLELDLAHFDIE 446
           FDD++A II S  ++       D++ +D+E
Sbjct: 545 FDDELAGIIHSPTVSTRSSRSSDVSEYDLE 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,480
Number of Sequences: 5004
Number of extensions: 38657
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)