Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J17
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    35   0.036
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575...    28   4.2  
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108...    28   4.2  
12_02_0313 + 17404002-17406410                                         27   7.3  
11_08_0024 + 27747449-27747940,27748141-27750177                       27   7.3  

>06_03_1067 - 27326167-27326295,27326572-27326656,27326993-27327033,
            27327274-27327333,27327843-27327962,27328842-27329114,
            27329186-27329257,27329798-27329860,27329957-27330139,
            27330544-27330660,27330734-27332683,27332770-27332907,
            27333003-27333284,27334650-27335522
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 441  IERALQTRWPEHNLIRYGSTTTGLALKSSDAD 536
            + R LQ  WP      +GS  TGLAL +SD D
Sbjct: 1139 VTRCLQVLWPRSRTNLFGSNATGLALPTSDVD 1170


>10_02_0139 +
           5753426-5754841,5755566-5755655,5756011-5756379,
           5756796-5756982,5757567-5757631
          Length = 708

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = +3

Query: 357 FDDQIADIIDSALMTKDKLLELDLAHFDIERALQTRWPEHNLIRYGSTTTGLALKSSDAD 536
           F      I +S + + +++ +       + R +   WP   L  YGS        +SD D
Sbjct: 534 FTPSFMSIFESLVPSDEEISKQKQLLATLSRLINKEWPNSKLYLYGSCANSFGFSNSDID 593


>02_01_0156 -
           1086750-1086920,1087680-1087847,1087935-1088171,
           1088763-1089073,1089343-1089571
          Length = 371

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 222 NATLSEVKENNLLPENVSQELSLLILVMTISSTVREKMGIWQK 350
           NAT+S V  N   PE ++++  ++I  + +++ VR   G W K
Sbjct: 262 NATVSIVHSNTKKPEEITRQADIVIAAVGVANLVR---GSWIK 301


>12_02_0313 + 17404002-17406410
          Length = 802

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 189 RKKHQDCVKDENATLSEVKENNLLPE---NVSQELSLLILVMTISSTVREKMGIWQKRDF 359
           R   QD V + + ++S  K ++L+ +   +VSQ    ++     ++T R K  +W  +DF
Sbjct: 466 RSLFQDYVFNHDGSISHCKMHSLVHDLAISVSQNEHAIVGCENFTATERVKNLVWDHKDF 525

Query: 360 DDQI 371
             ++
Sbjct: 526 TTEL 529


>11_08_0024 + 27747449-27747940,27748141-27750177
          Length = 842

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 360 DDQIADIIDSALMTKDKLLELDLAHFDIERAL 455
           D+Q+A  +  +L   D+L++LDL+H  +  AL
Sbjct: 506 DNQLASTVPPSLFHLDRLVKLDLSHNFLSGAL 537


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,000,444
Number of Sequences: 37544
Number of extensions: 210018
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)