Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J17
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    30   0.94 
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    29   2.2  
AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator prote...    29   2.9  
AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator prote...    29   2.9  
Z54237-5|CAN86900.1|  273|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z54237-4|CAN86899.1|  297|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U28991-3|AAK68309.1|  298|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL132902-10|CAB82002.1|  286|Caenorhabditis elegans Hypothetical...    27   6.6  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    27   8.7  

>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
            K10D2.3 protein.
          Length = 1425

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 351  RDFDDQIADIIDSALMTKDKLLELDLAHFDIERALQTRWPEH-NLIRYGSTTTGLALKSS 527
            +D DD I       ++ + +L  LD    +++  L+  + E   L  +GS  TGL++  S
Sbjct: 1007 KDIDDMIDKYYHENILDERRLKMLDHKIDELQSFLRKNYREDVTLTTFGSVMTGLSVNCS 1066

Query: 528  DAD 536
            D D
Sbjct: 1067 DID 1069


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 235 LKVAFSSFTQS*CFLRFSKSFDIFRNNTYLLFSEMYRYFTYNLISLHLQPTD 80
           L ++F S  Q  CF+R  +  +I +   +   ++     T ++   H QPTD
Sbjct: 337 LFISFHSLLQPLCFMRMREFRNILKRTIFPCLTKTDPILTTDVFKRHSQPTD 388


>AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator protein
           2, isoform b protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 477 NLIRYGSTTTGLALKSSDAD 536
           N++  GST TGLA K+SD D
Sbjct: 88  NIVPTGSTVTGLATKNSDLD 107


>AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator protein
           2, isoform a protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 477 NLIRYGSTTTGLALKSSDAD 536
           N++  GST TGLA K+SD D
Sbjct: 88  NIVPTGSTVTGLATKNSDLD 107


>Z54237-5|CAN86900.1|  273|Caenorhabditis elegans Hypothetical
           protein T11B7.3b protein.
          Length = 273

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 342 WQKRDFDDQIADIIDSALMTKDKLLELDLAHFDIERALQTRWPEHNLIRYGSTTTGL 512
           W+  D  DQ+  +++S  +  D L  +DL    I     +R  E+ L+R     T L
Sbjct: 29  WEMSDLQDQVVGVVESFKVETDSLW-IDLMDVQIRHTAPSRPLENPLLRRDKRFTKL 84


>Z54237-4|CAN86899.1|  297|Caenorhabditis elegans Hypothetical
           protein T11B7.3a protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 342 WQKRDFDDQIADIIDSALMTKDKLLELDLAHFDIERALQTRWPEHNLIRYGSTTTGL 512
           W+  D  DQ+  +++S  +  D L  +DL    I     +R  E+ L+R     T L
Sbjct: 29  WEMSDLQDQVVGVVESFKVETDSLW-IDLMDVQIRHTAPSRPLENPLLRRDKRFTKL 84


>U28991-3|AAK68309.1|  298|Caenorhabditis elegans Hypothetical
           protein F08F8.6 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 VSQELSLLILVMTISSTVREKMGIWQK-RDFDDQIADIIDSALMTKDKL 413
           V+  L  + L+ TI S V     +W   +D D+ I D+ID A  T  KL
Sbjct: 41  VASALCFIALLSTIYS-VFNAFQLWSTIQDLDNAIIDLIDEASSTLQKL 88


>AL132902-10|CAB82002.1|  286|Caenorhabditis elegans Hypothetical
           protein Y71A12B.11 protein.
          Length = 286

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +3

Query: 306 TISSTVREKMGIWQKRDFDDQIADIIDSAL 395
           T+SS ++EK+ I +K+  DDQ+ D +D  L
Sbjct: 53  TMSSEIQEKLDILKKQ--DDQLRDALDEEL 80


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
            protein Y110A7A.16 protein.
          Length = 1250

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 216  DENATLSEVKENNLLPENVSQELSLLILVM 305
            +++A L+ + EN    EN+  ELS LILV+
Sbjct: 1140 EDSALLNVLSENYRWLENIGNELSQLILVL 1169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,352
Number of Sequences: 27780
Number of extensions: 212362
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)