Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J17
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.1  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 198 HQDCVKDENATLSEVKENNLLPENV 272
           H+D       T +EVK + + PE+V
Sbjct: 136 HRDLPGKSTTTTAEVKRDTINPEDV 160


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 23  VFLIY*LFN*IGYKTCTL 76
           VF I  +F  IGY TC L
Sbjct: 90  VFKIAPIFKGIGYATCVL 107


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 23  VFLIY*LFN*IGYKTCTL 76
           VF I  +F  IGY TC L
Sbjct: 143 VFKIAPIFKGIGYATCVL 160


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 293 NISNDN*FNGAGKNGN 340
           N +N+N  NGA  NGN
Sbjct: 244 NNNNNNNNNGANDNGN 259


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 204 PDVSYGFQKVLTSLETILIFYLAKCTD 124
           PD++Y    VL  ++ +L F+L +  D
Sbjct: 192 PDLNYYNPVVLDDMQNVLRFWLRRGFD 218


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 198 HQDCVKDENATLSEVKENNLLPENV 272
           H+D       T  EVK + + PE+V
Sbjct: 136 HRDLPGKSTTTTVEVKRDTINPEDV 160


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 204 PDVSYGFQKVLTSLETILIFYLAKCTD 124
           PD++Y    VL  ++ +L F+L +  D
Sbjct: 192 PDLNYYNPVVLDDMQNVLRFWLRRGFD 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,251
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)