Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J16
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    37   0.002
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    32   0.068
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.6  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   5.9  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +3

Query: 360 HKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPSELPPIS 539
           H L++ + +WF + PP++ L      +   L+ +    +VE++WG++  + + S LP  S
Sbjct: 64  HPLQHEWTLWFLK-PPTQGLE-----WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKS 117

Query: 540 DLHLFKLGIK 569
           D   F  GI+
Sbjct: 118 DYSYFLKGIR 127


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 31.9 bits (69), Expect = 0.068
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +3

Query: 357 EHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPSELPPI 536
           +H L   + +WF   PP+  L      + +  + +    SVE++WG+++++   S LP  
Sbjct: 37  KHPLARPWTLWFLM-PPTPGLE-----WNELQKNIITFNSVEEFWGIHNNINPASSLPIK 90

Query: 537 SDLHLFKLGIK 569
           SD   F+ G++
Sbjct: 91  SDYSFFREGVR 101


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 468 VASVEQWWGLYSHMVRPSE-LPPISDLH 548
           VA++++W+ + S    PSE L P+ D H
Sbjct: 564 VAALDEWYSILSTCSNPSELLDPLKDKH 591


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 403 PLRASYPLPPLVMGRRYVW 459
           P+  +YPLPP+++     W
Sbjct: 13  PISLAYPLPPIILTNPLTW 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,601
Number of Sequences: 5004
Number of extensions: 44390
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)