Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J16
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 53 1e-07
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 48 5e-06
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 46 2e-05
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 31 0.85
03_06_0217 - 32432590-32433495 30 1.1
03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262 30 1.5
08_02_0205 - 14280797-14280872,14281669-14281973 29 2.0
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 29 2.0
01_06_0200 + 27476065-27476487 29 2.6
05_02_0053 - 6152204-6152329,6152817-6152981,6154698-6154883,615... 29 3.4
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 3.4
01_06_0607 - 30568119-30568398,30569514-30569545 27 8.0
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +3
Query: 360 HKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPSELPPIS 539
H L + +W++RR P A + Y ++ + ++VE +W Y H+ RP LP +
Sbjct: 49 HPLRRRFVLWYTRRTPG----ARSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPT 104
Query: 540 DLHLFKLGIK 569
DLHLFK GI+
Sbjct: 105 DLHLFKEGIR 114
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 336 APPV--PLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHM 509
APP P H LE+ + WF P + AT +G ++R + ++VE +W LY+++
Sbjct: 42 APPQANPAAPHPLEHAWTFWFDN-PQGKSKQAT---WGSSIRPIHTFSTVEDFWSLYNNI 97
Query: 510 VRPSELPPISDLHLFK 557
PS+L +D H FK
Sbjct: 98 HHPSKLVVGADFHCFK 113
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 360 HKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPSELPPIS 539
HKL + W+ + + +A +G +LR +VE++WGLY + RPS++ +
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAA----WGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNA 85
Query: 540 DLHLFKLGIK 569
D HLFK G++
Sbjct: 86 DFHLFKAGVE 95
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 411 AKGAAARTTSSSNTPTCARATAQGVHSP 328
A AAA TTS +N P C+ AT+ H P
Sbjct: 121 AAAAAATTTSPNNPPPCSTATSDHHHLP 148
>03_06_0217 - 32432590-32433495
Length = 301
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 411 AKGAAARTTSSSNTPTCARATAQGVHSPHCLCHRHH 304
A GAA TT+++ T + GV P H+HH
Sbjct: 186 AAGAAKTTTTAAAAATAVAGSESGVQVPRFATHQHH 221
>03_06_0605 + 35024493-35025152,35025425-35025710,35026249-35026262
Length = 319
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 460 WVGWRPWNSGGDYTRTWCVHQSCPQSPICTSSSWV 564
W+GW +N GG Y + + ICT+ S +
Sbjct: 248 WMGWAGFNGGGPYAANSVASMAVLNTNICTAMSLI 282
>08_02_0205 - 14280797-14280872,14281669-14281973
Length = 126
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 376 ATGCGSRGGPLRASYPLPPLVMGRRYVWWVGWR 474
A+GC + P RAS P P R + W+GW+
Sbjct: 16 ASGCVAEELPPRASLPFPNTPRSRVPLAWLGWQ 48
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 29.5 bits (63), Expect = 2.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 448 RYVWWVGWRPW 480
R VWW+GWR W
Sbjct: 284 RLVWWLGWRQW 294
>01_06_0200 + 27476065-27476487
Length = 140
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 403 PLRASYPLPPLVMGRRYVWWVGWRPWNSGGD 495
P R S PLP RR WW WR W + D
Sbjct: 29 PPRESPPLPTSATCRRGRWW--WRAWQARRD 57
>05_02_0053 -
6152204-6152329,6152817-6152981,6154698-6154883,
6155055-6155078,6155649-6155822
Length = 224
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 393 RTTSSSNTPTCARATAQGVHSPHCLCHR 310
R +++TP C+ A++ SPHCL R
Sbjct: 11 RLVVTASTPACSSASSSTSPSPHCLLSR 38
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 454 VWWVGWRPWN-SGGDYTRTWCVHQSCPQ-SPICT 549
+W V WRPW Y R W + PQ S +C+
Sbjct: 31 LWAVNWRPWRLYSWIYARKWPAYVQGPQLSTLCS 64
>01_06_0607 - 30568119-30568398,30569514-30569545
Length = 103
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 414 ELSATTTGYGQALRLVGRVASVEQWWG 494
ELSAT+T G+A R R E+ WG
Sbjct: 77 ELSATSTRTGRAARSGSRTGEREEGWG 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,132,810
Number of Sequences: 37544
Number of extensions: 355188
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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