Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J16
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation fact...    54   1e-07
AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation i...    54   1e-07
AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation fa...    43   2e-04
AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation fa...    43   2e-04
AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation fa...    43   2e-04
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    27   7.2  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U64605-1|AAF98601.1|  212|Caenorhabditis elegans Initiation factor
           4e (eif4e) familyprotein 4 protein.
          Length = 212

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%)
 Frame = +3

Query: 342 PVPLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPS 521
           PV   +H+L+Y Y   +  RP  +        Y   ++ VG + SVEQ+W +  H  RP+
Sbjct: 25  PVGSDDHQLQYSYTFSYFMRPTGK---FDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPT 81

Query: 522 ELPPISDLHLFKLGIK 569
           E+   +D+H FK G+K
Sbjct: 82  EMCDKADIHFFKTGVK 97


>AF214651-1|AAF62414.1|  212|Caenorhabditis elegans translation
           initiation factor eIF4Eisoform 4 protein.
          Length = 212

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%)
 Frame = +3

Query: 342 PVPLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSHMVRPS 521
           PV   +H+L+Y Y   +  RP  +        Y   ++ VG + SVEQ+W +  H  RP+
Sbjct: 25  PVGSDDHQLQYSYTFSYFMRPTGK---FDPEDYASYVQPVGIMKSVEQFWSIMVHFKRPT 81

Query: 522 ELPPISDLHLFKLGIK 569
           E+   +D+H FK G+K
Sbjct: 82  EMCDKADIHFFKTGVK 97


>AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform b protein.
          Length = 251

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +3

Query: 327 EESAPPVPLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSH 506
           + S PP  L  H L+  + +W+ +   ++E       +   L++V    +VE +W LY+H
Sbjct: 21  DASVPPELLTRHPLQNRWALWYLKADRNKE-------WEDCLKMVSLFDTVEDFWSLYNH 73

Query: 507 MVRPSELPPISDLHLFKLGIK 569
           +     L   SD +LFK GIK
Sbjct: 74  IQSAGGLNWGSDYYLFKEGIK 94


>AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform c protein.
          Length = 250

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +3

Query: 327 EESAPPVPLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSH 506
           + S PP  L  H L+  + +W+ +   ++E       +   L++V    +VE +W LY+H
Sbjct: 21  DASVPPELLTRHPLQNRWALWYLKADRNKE-------WEDCLKMVSLFDTVEDFWSLYNH 73

Query: 507 MVRPSELPPISDLHLFKLGIK 569
           +     L   SD +LFK GIK
Sbjct: 74  IQSAGGLNWGSDYYLFKEGIK 94


>AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform a protein.
          Length = 248

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/81 (30%), Positives = 41/81 (50%)
 Frame = +3

Query: 327 EESAPPVPLHEHKLEYCYWMWFSRRPPSRELSATTTGYGQALRLVGRVASVEQWWGLYSH 506
           + S PP  L  H L+  + +W+ +   ++E       +   L++V    +VE +W LY+H
Sbjct: 21  DASVPPELLTRHPLQNRWALWYLKADRNKE-------WEDCLKMVSLFDTVEDFWSLYNH 73

Query: 507 MVRPSELPPISDLHLFKLGIK 569
           +     L   SD +LFK GIK
Sbjct: 74  IQSAGGLNWGSDYYLFKEGIK 94


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 229 LHIFLSVMLFQVH*HVSPTA*PRTRCTLIF-IRQFNKRNYNSVITLNNLFTI 77
           +H+FLSV L  +   +S +A    +  + F ++ FNK N NS+  LN  + I
Sbjct: 1   MHLFLSVFLLLILPLISTSAVENNQNIVDFSVKDFNK-NINSIDILNKKWDI 51


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 493 DYTRTWCVHQSCPQSPICTSSSWVSS 570
           DYT   C  Q CP+   C  S  + S
Sbjct: 309 DYTLIQCAKQKCPKPSACVYSKMIQS 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,200,604
Number of Sequences: 27780
Number of extensions: 277802
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)