Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J15
         (412 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    75   4e-16
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   4.7  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   4.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.2  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 74.5 bits (175), Expect = 4e-16
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
 Frame = +2

Query: 107 RTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEKADILELTV---X 277
           R    R+  KP++E++RRARIN  L+ELK L++ A++ +    +KLEKADILE+TV    
Sbjct: 30  RVSDNRRSNKPIMEKRRRARINNSLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLQ 89

Query: 278 XXXXXXXXXXXXXNPSVDVDRFRAGFTHAANEVSRCLASIPGVD 409
                        +PSV V +FRAGF+  A+EV R     PG+D
Sbjct: 90  NLQRQQAAMSAATDPSV-VSKFRAGFSECASEVGR----FPGLD 128


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = +3

Query: 360 TQPM-KCPVVWLL 395
           T PM  CP+VWL+
Sbjct: 285 TVPMIVCPIVWLM 297


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = +3

Query: 360 TQPM-KCPVVWLL 395
           T PM  CP+VWL+
Sbjct: 285 TVPMIVCPIVWLM 297


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 324 VWTWIASELDSRTQP 368
           VW  + +ELD R  P
Sbjct: 363 VWEMVLNELDRREDP 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,200
Number of Sequences: 336
Number of extensions: 1740
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)