Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J15
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.86 
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.0  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   2.6  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   4.6  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   6.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = -2

Query: 375 TSLAACVNPARKRSTSTLGFSDKXXXXXXXXXXRTVSSKISAFSNLATFSPSDCNALTIS 196
           +SL+    P+   S+S+   S             + SS I + S+ ++ SP+  ++   S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS 292

Query: 195 SLSSSKQRLMRARLLRSS 142
           S SSS      +  + SS
Sbjct: 293 SSSSSSSPTSTSSTISSS 310



 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 336 STSTLGFSDKXXXXXXXXXXRTVSSKISAFSNLATFSPSDCNALTISSLSSSKQR 172
           S+ST+  S             + S   S+FS+  + S S  ++ T++S SSS  R
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVS-SSSSTSSSTLTSSSSSSSR 392



 Score = 25.0 bits (52), Expect = 4.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -2

Query: 375 TSLAACVNPARKRSTSTLGFSDKXXXX--XXXXXXRTVSSKISAFSNLATFSPSDCNALT 202
           +S+ +  +     S+STL  S               + SS +S+ S+ +T S S  ++  
Sbjct: 213 SSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI 272

Query: 201 ISSLSSS 181
           ISS SSS
Sbjct: 273 ISSSSSS 279


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 258 ISAFSNLATFSPSDCNALTISSLSSSKQRLMRARLLRSSIGFIT 127
           ++ F    + SP D   LT + LS S ++  R R ++ +  FIT
Sbjct: 307 LTIFDYYLSVSPKDITRLTNAILSLSMKQFERDRDIKKATDFIT 350


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 62  EIAYSLADDGPQPVSRTYQYRKVM 133
           E+  +LA+D P+ VS+ Y+Y  V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 98  PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 202
           P +R  + R   K + ERKRR  I    D+LK+ +
Sbjct: 328 PYTRNPELRTSHK-LAERKRRKEIKELFDDLKDAL 361


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  SLADDGPQPVSRTYQYRKVMKPMLERKRRA 163
           S+A   P P+S ++   ++  PM  R+  A
Sbjct: 467 SMAPPSPSPISPSFPLHEIQSPMPNRRMAA 496


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -3

Query: 407 PLQE*KPNNGTLHWLRA*IQLGSDPRPHLGSVTSVVGALVCEGDELSVPKYQLSPIWQRS 228
           P ++ K N   L WLRA  +   +       +TS++G  +      S+ K  L+ +W R 
Sbjct: 83  PTEKKKRNKEAL-WLRARQKKWKEIFELCQKITSLLGGTILIDVSFSMEKDVLTYLWMRV 141

Query: 227 LLQIV 213
             Q++
Sbjct: 142 HYQVI 146


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 323 LGSVTSVVGALVCEGDELSVPKYQLSPIWQRSLLQI 216
           L +V+  +G++VC   +LSV  Y L  + +   +Q+
Sbjct: 770 LSTVSKHMGSVVCVNSDLSVNWYSLPNLREERKMQL 805


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 247 ES*YFGTDSSSPSQTKAPTTLVTEP 321
           E+ YF  DSSSP +  +P  L   P
Sbjct: 197 EAFYFNADSSSPLRKLSPIELPVTP 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,569
Number of Sequences: 5004
Number of extensions: 30817
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)