Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J15
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0143 - 944169-947273                                             28   2.5  
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096...    28   2.5  
09_04_0432 + 17510820-17510996,17511076-17511546                       28   3.3  
01_06_0928 + 33085403-33089224                                         27   4.4  
11_06_0503 - 24374657-24375211                                         27   5.8  
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146...    27   5.8  
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522...    27   5.8  
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957...    27   7.7  

>05_01_0143 - 944169-947273
          Length = 1034

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 390  AKQRDTSLAACVNPARKRSTSTLGFSDK 307
            AK++  SL ACVNPA ++  S + F  K
Sbjct: 1007 AKKKKPSLLACVNPALQKQHSDMVFFTK 1034


>04_04_0476 -
           25508952-25509004,25509245-25509326,25509453-25509611,
           25509702-25509767,25509898-25510067,25510172-25510262,
           25510331-25510410,25510887-25511003,25511092-25511218,
           25511685-25511865,25511978-25512366,25512959-25513135,
           25513306-25513500,25513844-25514031,25514192-25514500,
           25514592-25514637
          Length = 809

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +2

Query: 71  YSLADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEK 250
           Y+L  DG   V    +  K  K  +++KRR+R  R + E++E M S      +NV  ++ 
Sbjct: 64  YALPGDGDLVVECEEEGEKGEK-RVKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQD 122

Query: 251 ADILE 265
            + +E
Sbjct: 123 GNDME 127


>09_04_0432 + 17510820-17510996,17511076-17511546
          Length = 215

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 146 ERKRRARINRCLDELKELMVSA 211
           ERKRR RIN  LD L+ L+ SA
Sbjct: 36  ERKRRERINAHLDTLRGLVPSA 57


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
 Frame = +2

Query: 32  TEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPM---------LERKRRARINRCLD 184
           TE  +  + Y+I   +A+ G Q          V KP+         L  K R  I++ L+
Sbjct: 46  TEDVLDELEYDILKRVAEKGAQASLMVASSNSVPKPLHAASNKMSNLRPKNRKLISK-LE 104

Query: 185 ELKELMVSA 211
           ELKE++V A
Sbjct: 105 ELKEILVEA 113


>11_06_0503 - 24374657-24375211
          Length = 184

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 80  ADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 202
           +D+G  PV    + +K  K  + R  +A+IN C+   +E M
Sbjct: 43  SDEGKAPVMEKKKKKKKAKTKMVRFTQAQINNCITYKEEEM 83


>05_03_0293 -
           11813846-11813965,11814073-11814408,11814516-11814617,
           11814729-11814912,11815012-11815196,11815949-11816095,
           11816310-11816426
          Length = 396

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 286 QTKAPTTLVTEPKCGRGSLP 345
           +TK P   +T P  GRG+LP
Sbjct: 110 RTKMPARFLTTPSAGRGTLP 129


>04_04_1170 +
           31449978-31450135,31451625-31451661,31452158-31452273,
           31452389-31452419,31452597-31452662,31452753-31452818,
           31452969-31453223,31453598-31453687
          Length = 272

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 95  QPVSRTYQYRKVMKPMLERKRRA-RINRCLDELKELMVSALQSEGENVAKLEKA 253
           Q   +T + R V+  ++ RKRR  RIN  L  L+EL+ +  ++  + V+ L++A
Sbjct: 95  QEEEQTPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKT--DKVSMLDEA 146


>03_03_0105 +
           14491198-14493636,14494793-14494957,14495647-14495760,
           14496223-14496487,14497164-14497237,14497851-14497928
          Length = 1044

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 225 PSDCNALTISSLSSSKQRLMRARLLRSSI 139
           P +CN  +ISS SS  ++++R  L  S +
Sbjct: 596 PKECNECSISSSSSGHKQILRRYLFGSKL 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,173,187
Number of Sequences: 37544
Number of extensions: 212055
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)