Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J14
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...   195   5e-51
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    27   1.6  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   6.3  
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   8.4  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   8.4  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    25   8.4  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score =  195 bits (475), Expect = 5e-51
 Identities = 91/170 (53%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
 Frame = +3

Query: 9   LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLV---QVTHECLQRAIEIVKPGEKYREI 179
           + N+DV++YH GFHGDLNET++VG   + +  LV   + T   L +AI  VKPG  ++E 
Sbjct: 205 IVNIDVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAIAAVKPGVLFQEF 264

Query: 180 GNVIQKHAQA---NGFSVVRSYCGHGIHRLFHTAPNVPHYAKNKAVGVMKPGHCFTIEPM 350
           GN+I+KH  +      SVVR+YCGHGI++LFH +P++PHY+ NKA G+ +PG  FTIEPM
Sbjct: 265 GNIIEKHTNSITEKQISVVRTYCGHGINQLFHCSPSIPHYSHNKAPGIARPGMTFTIEPM 324

Query: 351 INEGGWRDEQWPDHWTAVTADGSRSAQFEQTLLVTETGCDVLTKRGAGRP 500
           +  G  RD  WPD WT+ TA G  SAQFE TLLVTETGC+VLT R    P
Sbjct: 325 LTLGPARDITWPDDWTSSTASGRCSAQFEHTLLVTETGCEVLTARLPNSP 374


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 113 LNEFSASFGYAADEKC 66
           LNEF AS+ Y+ +EKC
Sbjct: 129 LNEFKASYQYSEEEKC 144


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 15  NVDVTVYHRGFHGDLNE--TFFVGSVPET 95
           N D +VYH  FHGD  +    F+GS   T
Sbjct: 138 NNDTSVYHMTFHGDRVKPINVFLGSTDVT 166


>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 161 TRLHNLYRPLEAFVCDLNEFSASFGYAADEKCFI-EVTVETAVVDC 27
           TR H     +EAF  ++ E  AS+    + +C+I E     A  DC
Sbjct: 258 TRYHKRQVDMEAFGEEIEEVVASYEKNYNGRCYISEEACSKATNDC 303


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 119  CDLNEFSASFGYAADEKCFIEVTVE 45
            C L++ SA  G+  D   F +VTVE
Sbjct: 1018 CQLSKVSALSGFEGDATPFTDVTVE 1042


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 358 SFIIGSIVKQCPGFITPTALFFA*CGT 278
           S +I + + +  G   PT +FFA CGT
Sbjct: 120 SNVINNSLAKNSGIAGPTKIFFANCGT 146


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 57  LNETFFVGSVPETSRKLVQVTHECLQRAIEIVKPGE 164
           L +    GS+ E  ++ ++V  +C+Q + +I KP E
Sbjct: 14  LKQAITTGSISEEEKESLEVAAQCIQDSFKI-KPEE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,209
Number of Sequences: 5004
Number of extensions: 47391
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)