Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J14
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 193 1e-49
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 165 2e-41
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 141 4e-34
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 119 2e-27
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 94 9e-20
07_01_0339 - 2443123-2443508,2443590-2443651,2443692-2443704,244... 71 5e-13
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 31 0.70
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 29 2.8
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 28 4.9
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 28 6.5
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 193 bits (470), Expect = 1e-49
Identities = 92/164 (56%), Positives = 113/164 (68%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHECLQRAIEIVKPGEKYREIGNV 188
+ NVDVTVY++G HGDLNET+FVG+V E S++LV+ T+ECL +AI IVKPG ++RE+G +
Sbjct: 1071 IVNVDVTVYYKGVHGDLNETYFVGNVDEASKQLVRCTYECLDKAIAIVKPGVRFREVGEI 1130
Query: 189 IQKHAQANGFSVVRSYCGHGIHRLFHTAPNVPHYAKNKAVGVMKPGHCFTIEPMINEGGW 368
I +HA +G SVV+SYCGHGI LFH APN+PHY++ W
Sbjct: 1131 INRHASMSGLSVVKSYCGHGIGELFHCAPNIPHYSR----------------------VW 1168
Query: 369 RDEQWPDHWTAVTADGSRSAQFEQTLLVTETGCDVLTKRGAGRP 500
D WPD WTAVTADG RSAQFE TLLVTETG +VLT R P
Sbjct: 1169 HDRLWPDEWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSP 1212
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 165 bits (402), Expect = 2e-41
Identities = 78/158 (49%), Positives = 101/158 (63%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHECLQRAIEIVKPGEKYREIGNV 188
+ N+DVTVY G+HGD + TF G+V + ++KLVQVT ECL +AI I PG + + IG
Sbjct: 189 IINIDVTVYLNGYHGDTSATFLCGNVDDKAKKLVQVTRECLDKAISICAPGVEIKRIGRT 248
Query: 189 IQKHAQANGFSVVRSYCGHGIHRLFHTAPNVPHYAKNKAVGVMKPGHCFTIEPMINEGGW 368
IQ HA F VVR + GHG+ ++FH P V H+ +N G M FTIEPM+ G
Sbjct: 249 IQDHADKFKFGVVRQFVGHGVGQVFHAEPVVLHF-RNNEWGRMTLNQTFTIEPMLTVGSV 307
Query: 369 RDEQWPDHWTAVTADGSRSAQFEQTLLVTETGCDVLTK 482
W D WTAVT DGS SAQFE T+L+TE G ++LT+
Sbjct: 308 NPVIWSDDWTAVTEDGSLSAQFEHTILITEDGAEILTQ 345
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 141 bits (341), Expect = 4e-34
Identities = 68/158 (43%), Positives = 97/158 (61%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHECLQRAIEIVKPGEKYREIGNV 188
+ N+DVTVY G+HGD ++TF G V E S++LV+VT EC+ RAI K G ++IG
Sbjct: 223 IINIDVTVYLNGYHGDTSKTFLCGEVDEASKRLVKVTEECMLRAISACKHGTSLKKIGRR 282
Query: 189 IQKHAQANGFSVVRSYCGHGIHRLFHTAPNVPHYAKNKAVGVMKPGHCFTIEPMINEGGW 368
I +HA+ +GF VV + GHG+ R+FH+ P + H +P ++ G
Sbjct: 283 ISEHAERHGFGVVDRFVGHGVGRIFHSEPMIYHQ-----------------QPALSMGSI 325
Query: 369 RDEQWPDHWTAVTADGSRSAQFEQTLLVTETGCDVLTK 482
+ W D WTAVT DGS +AQFE T+L+T+TG ++LTK
Sbjct: 326 DCDMWDDGWTAVTTDGSLAAQFEHTILITKTGAEILTK 363
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 119 bits (287), Expect = 2e-27
Identities = 57/146 (39%), Positives = 85/146 (58%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHECLQRAIEIVKPGEKYREIGNV 188
+ NVDV V+ G+HG + TF G V ++ R ++ ECL++ I + + G Y++IG
Sbjct: 182 IMNVDVNVFLNGYHGGASRTFVCGEVDDSIRHFLKAAEECLEKGITVCRDGVNYKKIGKK 241
Query: 189 IQKHAQANGFSVVRSYCGHGIHRLFHTAPNVPHYAKNKAVGVMKPGHCFTIEPMINEGGW 368
I K A G+ VV + GHGI ++H+ P + H+A + + G M G FTIEP++
Sbjct: 242 ISKLAYFYGYYVVDRFVGHGIGPIWHSEPLILHHANDNS-GRMVEGQTFTIEPILTMEKA 300
Query: 369 RDEQWPDHWTAVTADGSRSAQFEQTL 446
W D WT VTADGS +AQF+ T+
Sbjct: 301 ETVTWEDGWTTVTADGSWAAQFKHTV 326
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 93.9 bits (223), Expect = 9e-20
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHEC----LQRAIEIVKPGEKYRE 176
+ N+DVTVY G+HGD + T+ G V E++ +LV+ C + R I K G ++
Sbjct: 493 IINIDVTVYLNGYHGDTSRTYLCGEVDESTMQLVKKLIYCSVTNMLRGISACKHGASFKT 552
Query: 177 IGNVIQKH-AQANGFSV---VRSYCGHGIHRLFHTAPNVPHYA-KNKAVGVMKPGHCFTI 341
IG I A N F + + ++ G + + + Y+ +N++ G+ H +
Sbjct: 553 IGQRISDSPASTNNFMISDFMSTWTSTGTASIPLSDMELGKYSTRNRSFGI-PARHSQLV 611
Query: 342 EPMINEGGWRDEQWPDHWTAVTADGSRSAQFEQTLLVTETGCDVLT 479
EP ++ GG + W D WTAVT D S +AQFE T+LVT G ++LT
Sbjct: 612 EPTLSMGGTQCTLWDDGWTAVTVDSSLTAQFEHTILVTGDGAEILT 657
>07_01_0339 -
2443123-2443508,2443590-2443651,2443692-2443704,
2444483-2444495
Length = 157
Score = 71.3 bits (167), Expect = 5e-13
Identities = 30/47 (63%), Positives = 40/47 (85%)
Frame = +3
Query: 9 LCNVDVTVYHRGFHGDLNETFFVGSVPETSRKLVQVTHECLQRAIEI 149
+ NVDVTVY++G HGDLNET+FVG+V E S++LV+ T+ECL +AI I
Sbjct: 16 IVNVDVTVYYKGVHGDLNETYFVGNVDEASKQLVRCTYECLDKAIAI 62
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 78 GSVPETSRKLVQVTHECLQRAIEIVKPGEKYREIGNVIQKHAQANGFSVVRSYCGH 245
G+V + ++ + + A+ +V+PG+K +++ IQK A A +V H
Sbjct: 83 GAVTGKAADVLAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSH 138
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 432 IEQILSHQQ*PPSNGPATARPASLLRLSLVQ**NNAPASLRPPLCFLHNA 283
I+ + +H PP + P+TA P SL S + A + PP C HN+
Sbjct: 311 IDTLSTHSAAPPPDSPSTAAPPSL--PSAACWCSPAVQTTAPPSCLRHNS 358
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 239 RARYTQAVSHRAQCAALCKKQSGGRNEAGALFHY 340
R + + ++ RA+ L KKQSGG+ + G + Y
Sbjct: 550 RVNFRETITQRAEFDYLHKKQSGGQGQYGRVCGY 583
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 559 YSQAEN*DIALSFSSWSMNQGRPAPRLVRTSQP 461
YS +N +++ +WS + G+ + R +RTS+P
Sbjct: 298 YSFLQNQIVSMPIGTWSPHTGKASNRQLRTSRP 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,764,944
Number of Sequences: 37544
Number of extensions: 371808
Number of successful extensions: 1029
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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