Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J13
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    77   2e-15
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   1.3  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    26   3.0  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    26   4.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   7.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.2  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.2  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   9.2  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 38/130 (29%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
 Frame = +1

Query: 94  MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 270
           MAPP YA + K  ND+  + + +G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 271 KYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTN 450
            +  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T +KT  L     +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118

Query: 451 DTVAVNTNLD 480
             +  + +++
Sbjct: 119 PLIHTHASVN 128


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = +1

Query: 181 LKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDK 360
           L  ++    +  SG +  +    V   +     + + G       ++DN     I +   
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232

Query: 361 IAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAV--NTNLDLDLSGPVVDV 510
             A     L G   PQ         T F+  ++     T+LD +L  PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 190 KSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLAT 339
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 24/113 (21%), Positives = 48/113 (42%)
 Frame = +1

Query: 157 HLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLA 336
           ++G F+  +  K E G       T   +    F      Y  K    T T+       LA
Sbjct: 69  NIGAFQKKIGDKIEPGDVLCEIETDKAQID--FEQQDEGYLAKILIETGTKDVPVGKPLA 126

Query: 337 TDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDLDLSG 495
             +  +  +AA    T+E + A +  +K+G+ K++ +++  +  T+   ++SG
Sbjct: 127 VTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSG 179


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +1

Query: 379  VTLEGTFAPQTGSKTGKLKTSFTNDTVAVNTNLDL 483
            V++E    P+  + +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 229  SNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNT 330
            SNQ   K+  +L+ +   K +   +  K   DNT
Sbjct: 1160 SNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 328 TLATDITIQDKIAAGLKVTLEGTFAPQTGSKTG 426
           T+A D++   ++ A   VTLEGT   +TG  TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 214 TSGITSNQESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLAT 339
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 109 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLS 267
           YA  G   N   S  YH G    D+  ++E+ +  T+G  + ++SG   GS S
Sbjct: 317 YAMFGSCNNPQCSL-YH-GAVSADVPEQTEAPISKTAGSINPEDSGSEIGSNS 367


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 399 KGAFKCNLKASCNLILNGNISRQSVVCIPFLC 304
           +G +   L  +C L L GNIS      +  +C
Sbjct: 166 EGFWLQKLSQTCRLALTGNISEAKAFIVEIMC 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,963
Number of Sequences: 5004
Number of extensions: 42995
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)