Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J13
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 66 2e-11
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 31 0.43
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 31 0.57
10_08_1050 - 22559518-22559613,22559736-22559846,22559966-225600... 29 2.3
09_04_0427 - 17458974-17459129,17459227-17459335,17459753-174598... 27 7.1
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 27 7.1
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117 27 7.1
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212... 27 9.3
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025... 27 9.3
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 65.7 bits (153), Expect = 2e-11
Identities = 46/142 (32%), Positives = 75/142 (52%)
Frame = +1
Query: 94 MAPPYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 273
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 274 YAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTND 453
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 454 TVAVNTNLDLDLSGPVVDVAGV 519
+N ++ L+ S P+V+++GV
Sbjct: 113 YAGINASVGLN-SNPMVNLSGV 133
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 31.5 bits (68), Expect = 0.43
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 103 PYYADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAV 282
P Y G + D+ SK +HL + + + G++F SG+ S + V L+ + A+
Sbjct: 261 PQYVH-GTQLPDLESKFFHLDLMHPSVY---KVGLQFLSGVISGGNACCVAMLLAFREAI 316
Query: 283 KDYGLTFTEKWNTDNT 330
KDY T+ N D T
Sbjct: 317 KDYSTPSTKTLNRDLT 332
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 224 IPLVNSTPDSLLVFKSSLNTPR**PLLKTSLAFFPRSA*YGGAMPEVY 81
+P + PDSLLV +SL R PLL++ L+ P SA G P ++
Sbjct: 115 LPGFSHHPDSLLVLANSLAGARLFPLLRSLLSDLPPSALSRGLFPLLF 162
>10_08_1050 -
22559518-22559613,22559736-22559846,22559966-22560034,
22560172-22560327,22560416-22560458,22560566-22560661,
22561136-22561249,22561390-22561574
Length = 289
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 109 YADLGKKANDVFSKGYHLGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKYAVKD 288
YAD ANDV+ +G FK +T S + I + V +L+ Y KD
Sbjct: 133 YADTSGAANDVYEFVKKIGKFKETKRTDGVSTSDLIMRILKDYNQ-YVMRNLARGYTRKD 191
Query: 289 YGLTFTEK 312
G+++ ++
Sbjct: 192 LGVSYVKE 199
>09_04_0427 -
17458974-17459129,17459227-17459335,17459753-17459862,
17459981-17460226,17460591-17460680,17461325-17461602,
17461814-17461942,17462007-17462418
Length = 509
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 232 NQESGKVFGSLSSKYAVKDYGLTFTEKW 315
N + + +++Y+VKD LT T KW
Sbjct: 422 NGDMDSICSLTATRYSVKDLNLTITHKW 449
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 238 ESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 393
+ G G+ S++ ++KD L F + TD L+ + + DKI + V L+G
Sbjct: 304 QGGNNNGNFSNQPSLKD--LVFAQAETTD-ALSKKLAVNDKILENINVKLDG 352
>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
Length = 193
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 331 LATDITIQDKIAAGLKVTLEGTFAPQTGSKTGKLKTSFTNDTVAVNT 471
+A IT+ D A V L G+ P TGS + S +++++T
Sbjct: 13 IAGSITVHDLATAKWLVLLSGSSTPSTGSVHSVVSASLYKASMSIST 59
>06_03_0033 +
15719864-15720049,15720139-15720601,15720638-15721254,
15721300-15721869,15723625-15724140
Length = 783
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 235 QESGKVFGSLSSKYAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEG 393
Q G G+ S++ ++KD L F + NT + L+ + DKI + V L+G
Sbjct: 215 QGGGNNNGNFSNQPSLKD--LVFAQA-NTTDALSKKLAANDKILENIDVKLDG 264
>01_05_0444 +
22298490-22298598,22299847-22300108,22302420-22302516,
22302633-22302647,22302775-22302831,22303481-22303557,
22303688-22303967
Length = 298
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 405 WCKGAFKCNLKASCNLILNGNISRQSVVCIPFL 307
W A + KA +L N S Q++VC+PF+
Sbjct: 137 WLCNAQSADSKAFPRKLLAKNASIQTIVCVPFM 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,352
Number of Sequences: 37544
Number of extensions: 267298
Number of successful extensions: 590
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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