Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J13
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.8  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 391 GTFAPQTGSKTGKLKTSFTNDTVAVNTNL 477
           GT   Q    TG    +F NDTV+  T +
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 169 FKLDLKTKSESGVEFTSGITSNQ 237
           F+LDL+ + E+G + +S IT+ +
Sbjct: 174 FQLDLQLQDEAGGDISSFITNGE 196


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 390 RHLCTTDWEQDW*TEDVIY 446
           R L TTDW   W + DV++
Sbjct: 111 RWLFTTDWCDVWRSLDVLF 129


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 74  ELNKLQAWLLHTM 112
           EL K+  W LH M
Sbjct: 272 ELTKIDKWFLHKM 284


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +3

Query: 294 PHIHREMEYRQHSGD*YYH 350
           PH H   +Y  H G   +H
Sbjct: 318 PHQHHPSQYHPHRGSSPHH 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,410
Number of Sequences: 438
Number of extensions: 2966
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)