Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_J12
(473 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 232 5e-61
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 231 7e-61
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 231 7e-61
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 231 7e-61
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 231 7e-61
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 231 7e-61
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 231 7e-61
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 231 7e-61
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 122 8e-28
EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase su... 30 3.6
BC101482-1|AAI01483.1| 655|Homo sapiens hypothetical protein LO... 29 8.2
BC065706-1|AAH65706.1| 564|Homo sapiens C12orf51 protein protein. 29 8.2
AK091473-1|BAC03671.1| 655|Homo sapiens protein ( Homo sapiens ... 29 8.2
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 232 bits (567), Expect = 5e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 8 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 67
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 68 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 125
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 231 bits (566), Expect = 7e-61
Identities = 107/118 (90%), Positives = 115/118 (97%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
KKV PAVVIRQRK +RR+DGVF+YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74 KKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 122 bits (293), Expect = 8e-28
Identities = 56/62 (90%), Positives = 61/62 (98%)
Frame = +1
Query: 52 FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
FRISLGLPVGAVINCADNTGAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELR
Sbjct: 14 FRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELR 73
Query: 232 KK 237
KK
Sbjct: 74 KK 75
>EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase
subunit I protein.
Length = 513
Score = 30.3 bits (65), Expect = 3.6
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Frame = -1
Query: 332 FTMTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRR 153
+T+ P L+ Y + P ++ + AG++ L + + F+T TI++ +P A ++
Sbjct: 126 WTVYPPLAGNYSH-PGASVDLTIFSLHLAGVSSILGA-INFIT--TIINMKPPAMTQYQT 181
Query: 152 PL----IPCTAITYRFFAPVLSAQLITAPTGRPSEMRNFAPAEPPRPLL 18
PL + TA+ + PVL+A + T R F PA P+L
Sbjct: 182 PLFVWSVLITAVLLLLYLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
>BC101482-1|AAI01483.1| 655|Homo sapiens hypothetical protein
LOC283450 protein.
Length = 655
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 311 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 207
S + NTP + + GF C + + +S GLPFL
Sbjct: 497 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 531
>BC065706-1|AAH65706.1| 564|Homo sapiens C12orf51 protein protein.
Length = 564
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 311 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 207
S + NTP + + GF C + + +S GLPFL
Sbjct: 495 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 529
>AK091473-1|BAC03671.1| 655|Homo sapiens protein ( Homo sapiens
cDNA FLJ34154 fis, clone FCBBF3013058. ).
Length = 655
Score = 29.1 bits (62), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 311 SSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFL 207
S + NTP + + GF C + + +S GLPFL
Sbjct: 497 SGREHNTPDKAMWGFACTVRAQESSEDVSGGLPFL 531
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,595,789
Number of Sequences: 237096
Number of extensions: 1830807
Number of successful extensions: 8061
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8056
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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