Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J12
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   220   5e-58
AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical...    28   3.0  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical ...    27   6.9  
U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  220 bits (537), Expect = 5e-58
 Identities = 102/118 (86%), Positives = 110/118 (93%)
 Frame = +1

Query: 52  FRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELR 231
           FRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELR
Sbjct: 14  FRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELR 73

Query: 232 KKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 405
           KKV+  VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 74  KKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>AL161712-21|CAC70129.2|  729|Caenorhabditis elegans Hypothetical
           protein Y66D12A.5 protein.
          Length = 729

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +1

Query: 64  LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 231
           L L  G V  C +D    KN  + +  G   + G+LNR        M+ +T  K   +L 
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512

Query: 232 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 315
             V  P     +RK   +RD  F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 335  TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 427
            TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 1217 TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 1246


>AC199160-2|ABO33282.1|  222|Caenorhabditis elegans Hypothetical
           protein CE7X_3.2 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 335 TRGR*KARLSQDPSLRSALTYGPVLRLTPAP 427
           TRGR  A+   + ++R  L +  VLR TPAP
Sbjct: 90  TRGR-SAKRKANAAMRDVLEFEGVLRQTPAP 119


>U23452-1|AAK31545.2|  284|Caenorhabditis elegans Hypothetical
           protein R07G3.5 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 267 PLPDHHCWHYLFPEFW 220
           P+PDH  W  L PEF+
Sbjct: 178 PVPDHKTWRPLDPEFY 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,789,475
Number of Sequences: 27780
Number of extensions: 267173
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)