Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J11
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   0.85 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   0.85 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   6.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 TELPPTHPIRLGLALNFSVFYYEILNSPDR 270
           T+  P HP+R+   ++FS   Y+ + + D+
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 TELPPTHPIRLGLALNFSVFYYEILNSPDR 270
           T+  P HP+R+   ++FS   Y+ + + D+
Sbjct: 372 TDGEPVHPVRVNTIISFSGERYDFVINADQ 401


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 48  VESLLLQNEGRLPPI 92
           +E L    EGRLPP+
Sbjct: 209 LEELGFDTEGRLPPV 223


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 96  GGVRDGQRPQGGCRE 140
           GG RDG R  GG  E
Sbjct: 96  GGGRDGDRGDGGGEE 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,462
Number of Sequences: 336
Number of extensions: 1744
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)