Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J11
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   224   9e-60
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   223   2e-59
SPAC664.08c |||traub transciption factor family protein |Schizos...    27   2.8  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    26   3.7  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    26   4.8  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   4.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   6.4  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   8.5  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  224 bits (547), Expect = 9e-60
 Identities = 109/153 (71%), Positives = 129/153 (84%)
 Frame = +1

Query: 10  VDKHLIPSSQTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL 189
           ++KHLIP++ TGESKVFYYKMKGDY+RYLAEF  G   KEAA++SL AYKAASDIA+ EL
Sbjct: 105 LEKHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAEL 164

Query: 190 PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQL 369
           PPT P+RLGLALNFSVFYYEIL+SP+ AC LAK  FD+AI+ELD+LSEESYKDSTLIMQL
Sbjct: 165 PPTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQL 224

Query: 370 LRDNLTLWTSDMQGDGESAETEQKEQAQDVEDQ 468
           LRDNLTLWTSD + + +SA+ E    A   E++
Sbjct: 225 LRDNLTLWTSDAEYN-QSAKEEAPAAAAASENE 256


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  223 bits (545), Expect = 2e-59
 Identities = 105/139 (75%), Positives = 120/139 (86%)
 Frame = +1

Query: 10  VDKHLIPSSQTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL 189
           ++KHLIP++ + ESKVFYYKMKGDY+RYLAEFA G  R+ +A+ SL  YKAAS+IA  EL
Sbjct: 106 LEKHLIPNAASAESKVFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAEL 165

Query: 190 PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQL 369
            PTHPIRLGLALNFSVFYYEILNSPDRAC LAK AFD+AI+ELD+LSEESYKDSTLIMQL
Sbjct: 166 APTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQL 225

Query: 370 LRDNLTLWTSDMQGDGESA 426
           LRDNLTLWTSD +    +A
Sbjct: 226 LRDNLTLWTSDAEYSAAAA 244


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 322 TLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAETEQKEQAQDVEDQD 471
           T + E Y D+     LL+D +    +D   DG       K+Q Q  E+ D
Sbjct: 325 TFNPEIYNDTDFYQSLLKDFINSRMADSTRDGTVRWMATKKQKQKKENVD 374


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 370 LRDNLTLWTSDMQGDGESAETEQKEQ 447
           ++D+LTL  SD++GD E AE+ + +Q
Sbjct: 214 MKDSLTL--SDLRGDEEEAESSRYDQ 237


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 415 GESAETEQKEQAQDVEDQD 471
           GE+A  EQKE+A++ E+ D
Sbjct: 83  GEAAAEEQKEEAKEEEESD 101


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 160 AASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 294
           AA  + MT  +L  T P  LG+  +  V YY     PD A   AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 376 DNLTLWTSDMQGDGESAETEQKE--QAQD-VEDQD 471
           D+   W +D + DGE  E+E +E   + D VED D
Sbjct: 343 DSEAEWVADEEDDGEDLESEDEEVDNSDDIVEDGD 377


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 172 CLRLPCTRPASSRQPPCGRC 113
           C R   ++    RQ PCGRC
Sbjct: 342 CSRCKKSKKGCDRQRPCGRC 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,348
Number of Sequences: 5004
Number of extensions: 27904
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)