Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J10
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   0.95 
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.2  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.1  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    25   6.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   6.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    25   8.9  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 367 NWLKLRRSEHNTYIRVHQIIKCLSILLSNNKLN 465
           N+LKL + EHN  +R+ +++ CL + L  +K N
Sbjct: 463 NFLKLLK-EHNNPVRIIKLLDCLVLTLQADKGN 494


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 370 WLKLRRSEHNTYIRVHQIIKCLSILLSN 453
           W K    +HNT I V  +I C ++LL N
Sbjct: 241 WTK-NTIDHNTLIGVKNLIHCFAMLLKN 267


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 500 IKSASNILK**SFNLLFDNKIDRHF 426
           IKS+SNI K  S +L  DN +  HF
Sbjct: 348 IKSSSNIDKVTSNDLYLDNNLQSHF 372


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 379 LRRSEHNTYIRVHQIIKCLSILLSNNKLNDYYLSMLLALLICL 507
           L+R  H+ +I VH+ +K   I   ++++N  +  ML    +C+
Sbjct: 356 LKRESHS-FIHVHENVKDEDIETYSSEVNSCFSKMLAKNTVCV 397


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 490  QVTYLNNNHLTYYLITRLTDTL*FD 416
            +V YLN+  +TY ++ +L  TL  D
Sbjct: 1064 RVVYLNDEDITYDVVEKLNGTLALD 1088


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 436 SILLSNNKLNDYYLSMLLALLICLV 510
           S +L+N K   Y+L+ML+ LL CL+
Sbjct: 68  SFILNNGKA--YWLAMLVGLLECLL 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,562
Number of Sequences: 5004
Number of extensions: 24353
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)