Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_J10
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    30   0.96 
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    29   2.9  
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284...    28   5.1  
08_02_1592 + 28078055-28078966                                         27   6.8  
08_01_0793 - 7685702-7686955                                           27   6.8  
04_03_0187 + 12436934-12437108,12438020-12439044                       27   6.8  
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089...    27   6.8  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 315 HSEQIKRHEDAINRHKTKLAEIEKK*T*HIH 407
           HS +   H DA  RHKT+LA   +    HIH
Sbjct: 696 HSHRHSHHHDAHKRHKTELAGHRRHHVLHIH 726


>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 261 VFYKSILLLWQPPF 220
           +FY SILLLW+P F
Sbjct: 642 IFYNSILLLWEPQF 655


>02_01_0391 +
           2838471-2838794,2838892-2839028,2841155-2841631,
           2841719-2841999,2843009-2843051,2844094-2844148,
           2845771-2845824,2846282-2846314,2846574-2846621,
           2846885-2846950,2847286-2847426
          Length = 552

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 367 NWLKLRRSEHNTYIRVHQIIKCLSILLSNNKL 462
           N  +L RS + TY  +H   KCLS L S+N L
Sbjct: 197 NLRRLVRSLNKTYALLHAKKKCLSSLTSSNVL 228


>08_02_1592 + 28078055-28078966
          Length = 303

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 294 LDKEI-NFHSEQIKRHEDAINRHKTKLAE 377
           LDK+  NF+  ++KRHE  + +  T+LAE
Sbjct: 274 LDKDTANFNDVKLKRHEAILEKLATELAE 302


>08_01_0793 - 7685702-7686955
          Length = 417

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 294 LDKEI-NFHSEQIKRHEDAINRHKTKLAE 377
           LDK+  NF   ++KRHE  + +  T+LAE
Sbjct: 388 LDKDTANFSDAKLKRHEAVLEKLATELAE 416


>04_03_0187 + 12436934-12437108,12438020-12439044
          Length = 399

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 294 LDKEI-NFHSEQIKRHEDAINRHKTKLAE 377
           LDK+  NF   ++KRHE  + +  T+LAE
Sbjct: 370 LDKDTANFSDAKLKRHEAVLEKLATELAE 398


>02_03_0155 +
           15805683-15805743,15805824-15806105,15808293-15808959,
           15809440-15810490
          Length = 686

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 294 LDKEI-NFHSEQIKRHEDAINRHKTKLAE 377
           LDK+  NF   ++KRHE  + +  T+LAE
Sbjct: 657 LDKDTSNFSDAKLKRHEAVLEKLATELAE 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,627,560
Number of Sequences: 37544
Number of extensions: 139506
Number of successful extensions: 381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)